FFCP PHASE1:Hg19::chr5:77581386..77581396,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:77581386..77581396,+ | |||
|coexpression_cluster_id=C432 | |coexpression_cluster_id=C432 | ||
|description=CAGE_peak_at_chr5:77581386..77581396,+ | |description=CAGE_peak_at_chr5:77581386..77581396,+ | ||
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|ontology_enrichment_celltype=CL:0002057!5.35e-67!42;CL:0000860!2.88e-62!45;CL:0002009!1.93e-45!65;CL:0002194!1.36e-42!63;CL:0000576!1.36e-42!63;CL:0000040!1.36e-42!63;CL:0000559!1.36e-42!63;CL:0000766!5.74e-42!76;CL:0000557!2.62e-41!71;CL:0000839!5.39e-38!70;CL:0000738!5.69e-30!140;CL:0000763!6.49e-30!112;CL:0000049!6.49e-30!112;CL:0002087!7.73e-28!119;CL:0002031!3.09e-24!124;CL:0000037!1.51e-23!172;CL:0000566!1.51e-23!172;CL:0000988!5.33e-22!182;CL:0002032!9.25e-21!165;CL:0000837!9.25e-21!165;CL:0000134!8.99e-10!358;CL:0000842!1.46e-09!3;CL:0000767!1.59e-09!3;CL:0002320!1.73e-09!365;CL:0000219!2.01e-09!390;CL:0000034!1.34e-08!444;CL:0000723!6.02e-08!436;CL:0002393!2.13e-07!9;CL:0002397!2.13e-07!9;CL:0000224!2.21e-07!4;CL:0000048!2.82e-07!430 | |ontology_enrichment_celltype=CL:0002057!5.35e-67!42;CL:0000860!2.88e-62!45;CL:0002009!1.93e-45!65;CL:0002194!1.36e-42!63;CL:0000576!1.36e-42!63;CL:0000040!1.36e-42!63;CL:0000559!1.36e-42!63;CL:0000766!5.74e-42!76;CL:0000557!2.62e-41!71;CL:0000839!5.39e-38!70;CL:0000738!5.69e-30!140;CL:0000763!6.49e-30!112;CL:0000049!6.49e-30!112;CL:0002087!7.73e-28!119;CL:0002031!3.09e-24!124;CL:0000037!1.51e-23!172;CL:0000566!1.51e-23!172;CL:0000988!5.33e-22!182;CL:0002032!9.25e-21!165;CL:0000837!9.25e-21!165;CL:0000134!8.99e-10!358;CL:0000842!1.46e-09!3;CL:0000767!1.59e-09!3;CL:0002320!1.73e-09!365;CL:0000219!2.01e-09!390;CL:0000034!1.34e-08!444;CL:0000723!6.02e-08!436;CL:0002393!2.13e-07!9;CL:0002397!2.13e-07!9;CL:0000224!2.21e-07!4;CL:0000048!2.82e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.56e-43;33!CL:0002057;2.56e-43;33!CL:0000576;3.16e-31;48!CL:0000473;7.57e-31;39!CL:0000234;7.57e-31;39!CL:0000766;3.85e-26;69!CL:0002393;2.42e-20;6!CL:0002397;2.42e-20;6!CL:0002087;2.78e-12;104!CL:0000763;5.68e-09;100!CL:0001014;7.52e-08;2!CL:0001016;7.52e-08;2 | |ontology_enrichment_celltype_v019=CL:0000860;2.56e-43;33!CL:0002057;2.56e-43;33!CL:0000576;3.16e-31;48!CL:0000473;7.57e-31;39!CL:0000234;7.57e-31;39!CL:0000766;3.85e-26;69!CL:0002393;2.42e-20;6!CL:0002397;2.42e-20;6!CL:0002087;2.78e-12;104!CL:0000763;5.68e-09;100!CL:0001014;7.52e-08;2!CL:0001016;7.52e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.62e-60,42;CL:0002057,3.62e-60,42;CL:0000473,1.69e-52,48;CL:0000234,1.69e-52,48;CL:0002009,2.06e-46,61;CL:0000557,3.32e-42,67;CL:0002194,9.48e-42,59;CL:0000576,9.48e-42,59;CL:0000040,9.48e-42,59;CL:0000559,9.48e-42,59;CL:0000839,2.97e-37,66;CL:0000766,4.38e-34,72;CL:0000763,7.99e-26,108;CL:0000049,7.99e-26,108;CL:0002031,4.02e-23,120;CL:0002087,6.15e-21,115;CL:0000738,2.98e-20,136;CL:0002032,6.76e-17,161;CL:0000837,6.76e-17,161;CL:0000037,3.92e-16,168;CL:0000988,3.07e-15,177;CL:0002393,9.57e-14,9;CL:0002397,9.57e-14,9;CL:0001014,8.60e-08,2;CL:0001016,8.60e-08,2;CL:0000134,8.46e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.35e-43;42!CL:0000049;1.19e-07;108 | |ontology_enrichment_development_v019=CL:0002057;1.35e-43;42!CL:0000049;1.19e-07;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.98e-36!80;UBERON:0001474!1.84e-33!86;UBERON:0002390!2.89e-33!102;UBERON:0003061!2.89e-33!102;UBERON:0002193!6.31e-30!112;UBERON:0004765!6.41e-28!101;UBERON:0001434!6.41e-28!101;UBERON:0002405!4.90e-24!115;UBERON:0002204!2.87e-15!167;UBERON:0003081!2.10e-13!216;UBERON:0002384!4.24e-09!375 | |ontology_enrichment_uberon=UBERON:0002371!2.98e-36!80;UBERON:0001474!1.84e-33!86;UBERON:0002390!2.89e-33!102;UBERON:0003061!2.89e-33!102;UBERON:0002193!6.31e-30!112;UBERON:0004765!6.41e-28!101;UBERON:0001434!6.41e-28!101;UBERON:0002405!4.90e-24!115;UBERON:0002204!2.87e-15!167;UBERON:0003081!2.10e-13!216;UBERON:0002384!4.24e-09!375 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.03e-37,76;UBERON:0001474,2.42e-34,82;UBERON:0004765,3.32e-31,90;UBERON:0002405,3.64e-30,93;UBERON:0002390,1.42e-28,98;UBERON:0003061,1.42e-28,98;UBERON:0001434,5.58e-28,100;UBERON:0002193,7.99e-26,108;UBERON:0002204,3.08e-16,167;UBERON:0003081,4.26e-13,203;UBERON:0000926,7.36e-08,315;UBERON:0004120,7.36e-08,315;UBERON:0006603,7.36e-08,315 | |||
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|short_description=p@chr5:77581386..77581396,+ | |short_description=p@chr5:77581386..77581396,+ | ||
}} | }} |
Latest revision as of 16:32, 30 July 2015
Short description: | p@chr5:77581386..77581396, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:77581386..77581396, + |
Coexpression cluster: | C432_CD14_choriocarcinoma_Peripheral_CD34_Mast_Fibroblast_granulocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.62e-60 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.62e-60 | 42 |
defensive cell | 1.69e-52 | 48 |
phagocyte | 1.69e-52 | 48 |
macrophage dendritic cell progenitor | 2.06e-46 | 61 |
granulocyte monocyte progenitor cell | 3.32e-42 | 67 |
monopoietic cell | 9.48e-42 | 59 |
monocyte | 9.48e-42 | 59 |
monoblast | 9.48e-42 | 59 |
promonocyte | 9.48e-42 | 59 |
myeloid lineage restricted progenitor cell | 2.97e-37 | 66 |
myeloid leukocyte | 4.38e-34 | 72 |
myeloid cell | 7.99e-26 | 108 |
common myeloid progenitor | 7.99e-26 | 108 |
hematopoietic lineage restricted progenitor cell | 4.02e-23 | 120 |
nongranular leukocyte | 6.15e-21 | 115 |
leukocyte | 2.98e-20 | 136 |
hematopoietic oligopotent progenitor cell | 6.76e-17 | 161 |
hematopoietic multipotent progenitor cell | 6.76e-17 | 161 |
hematopoietic stem cell | 3.92e-16 | 168 |
hematopoietic cell | 3.07e-15 | 177 |
intermediate monocyte | 9.57e-14 | 9 |
CD14-positive, CD16-positive monocyte | 9.57e-14 | 9 |
CD1a-positive Langerhans cell | 8.60e-08 | 2 |
immature CD1a-positive Langerhans cell | 8.60e-08 | 2 |
mesenchymal cell | 8.46e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.03e-37 | 76 |
bone element | 2.42e-34 | 82 |
skeletal element | 3.32e-31 | 90 |
immune system | 3.64e-30 | 93 |
hematopoietic system | 1.42e-28 | 98 |
blood island | 1.42e-28 | 98 |
skeletal system | 5.58e-28 | 100 |
hemolymphoid system | 7.99e-26 | 108 |
musculoskeletal system | 3.08e-16 | 167 |
lateral plate mesoderm | 4.26e-13 | 203 |
mesoderm | 7.36e-08 | 315 |
mesoderm-derived structure | 7.36e-08 | 315 |
presumptive mesoderm | 7.36e-08 | 315 |