FFCP PHASE1:Hg19::chr5:71479469..71479482,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:71479469..71479482,+ | |||
|coexpression_cluster_id=C545 | |coexpression_cluster_id=C545 | ||
|description=CAGE_peak_at_chr5:71479469..71479482,+ | |description=CAGE_peak_at_chr5:71479469..71479482,+ | ||
|id=chr5:71479469..71479482,+ | |id=chr5:71479469..71479482,+ | ||
|ontology_enrichment_celltype=CL:0000128!2.72e-23!7;CL:0000126!2.72e-23!7;CL:0000127!2.72e-23!7;CL:0002453!2.72e-23!7;CL:0002319!1.47e-18!25;CL:0002605!3.22e-15!3;CL:0000047!1.64e-14!8;CL:0002603!7.66e-14!3;CL:0000133!1.60e-11!59;CL:0000243!3.31e-09!15;CL:0000125!3.31e-09!15;CL:0000030!3.31e-09!15;CL:0000339!3.31e-09!15;CL:0000221!3.99e-09!71;CL:0000095!3.63e-08!17;CL:0000123!3.63e-08!17;CL:0000540!1.54e-07!6;CL:0000031!1.54e-07!6;CL:0000404!1.54e-07!6 | |ontology_enrichment_celltype=CL:0000128!2.72e-23!7;CL:0000126!2.72e-23!7;CL:0000127!2.72e-23!7;CL:0002453!2.72e-23!7;CL:0002319!1.47e-18!25;CL:0002605!3.22e-15!3;CL:0000047!1.64e-14!8;CL:0002603!7.66e-14!3;CL:0000133!1.60e-11!59;CL:0000243!3.31e-09!15;CL:0000125!3.31e-09!15;CL:0000030!3.31e-09!15;CL:0000339!3.31e-09!15;CL:0000221!3.99e-09!71;CL:0000095!3.63e-08!17;CL:0000123!3.63e-08!17;CL:0000540!1.54e-07!6;CL:0000031!1.54e-07!6;CL:0000404!1.54e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002605;2.75e-41;3!CL:0002319;9.29e-31;25!CL:0000047;1.96e-27;2!CL:0000540;2.77e-20;6!CL:0000404;2.77e-20;6!CL:0000128;4.05e-18;7!CL:0000126;4.05e-18;7!CL:0000127;4.05e-18;7!CL:0000243;8.55e-08;15!CL:0000125;8.55e-08;15!CL:0000095;5.03e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.57e-41,3;CL:0000047,6.59e-41,8;CL:0002319,9.67e-31,25;CL:0000540,3.16e-20,6;CL:0000031,3.16e-20,6;CL:0000404,3.16e-20,6;CL:0000128,3.93e-18,7;CL:0000126,3.93e-18,7;CL:0000127,3.93e-18,7;CL:0002453,3.93e-18,7;CL:0000133,1.12e-16,59;CL:0000221,1.38e-13,72;CL:0000243,8.46e-08,15;CL:0000125,8.46e-08,15;CL:0000030,8.46e-08,15;CL:0000339,8.46e-08,15;CL:0000095,4.98e-07,17;CL:0000123,4.98e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;2.77e-20;6!CL:0000133;6.30e-12;59!CL:0000339;8.55e-08;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000956;2.57e-18;25!UBERON:0000203;2.57e-18;25!UBERON:0002791;4.55e-14;32!UBERON:0001869;5.59e-14;32!UBERON:0003528;3.78e-13;34!UBERON:0002020;3.78e-13;34!UBERON:0001893;3.92e-12;34!UBERON:0002780;2.27e-09;41!UBERON:0001890;2.27e-09;41!UBERON:0001016;1.30e-07;83!UBERON:0000955;2.63e-07;68 | |||
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|short_description=p@chr5:71479469..71479482,+ | |short_description=p@chr5:71479469..71479482,+ | ||
}} | }} |
Latest revision as of 16:02, 30 July 2015
Short description: | p@chr5:71479469..71479482, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:71479469..71479482, + |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.57e-41 | 3 |
neuronal stem cell | 6.59e-41 | 8 |
neural cell | 9.67e-31 | 25 |
neuron | 3.16e-20 | 6 |
neuroblast | 3.16e-20 | 6 |
electrically signaling cell | 3.16e-20 | 6 |
oligodendrocyte | 3.93e-18 | 7 |
macroglial cell | 3.93e-18 | 7 |
astrocyte | 3.93e-18 | 7 |
oligodendrocyte precursor cell | 3.93e-18 | 7 |
neurectodermal cell | 1.12e-16 | 59 |
ectodermal cell | 1.38e-13 | 72 |
glial cell (sensu Vertebrata) | 8.46e-08 | 15 |
glial cell | 8.46e-08 | 15 |
glioblast | 8.46e-08 | 15 |
glioblast (sensu Vertebrata) | 8.46e-08 | 15 |
neuron associated cell | 4.98e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 4.98e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.20e-21 | 81 |
nervous system | 2.10e-19 | 89 |
cerebral cortex | 2.57e-18 | 25 |
pallium | 2.57e-18 | 25 |
regional part of telencephalon | 2.23e-14 | 32 |
cerebral hemisphere | 2.23e-14 | 32 |
brain grey matter | 1.53e-13 | 34 |
gray matter | 1.53e-13 | 34 |
telencephalon | 1.53e-13 | 34 |
ectoderm-derived structure | 1.99e-13 | 171 |
ectoderm | 1.99e-13 | 171 |
presumptive ectoderm | 1.99e-13 | 171 |
pre-chordal neural plate | 4.72e-13 | 61 |
regional part of forebrain | 3.10e-11 | 41 |
forebrain | 3.10e-11 | 41 |
anterior neural tube | 3.10e-11 | 41 |
future forebrain | 3.10e-11 | 41 |
neural plate | 1.49e-09 | 82 |
presumptive neural plate | 1.49e-09 | 82 |
neurectoderm | 4.47e-09 | 86 |
brain | 8.03e-09 | 68 |
future brain | 8.03e-09 | 68 |
regional part of nervous system | 1.15e-08 | 53 |
regional part of brain | 1.15e-08 | 53 |
organ system subdivision | 2.17e-08 | 223 |
neural tube | 3.44e-08 | 56 |
neural rod | 3.44e-08 | 56 |
future spinal cord | 3.44e-08 | 56 |
neural keel | 3.44e-08 | 56 |
ecto-epithelium | 2.22e-07 | 104 |