FFCP PHASE1:Hg19::chr5:64454308..64454313,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:64454308..64454313,+ | |||
|coexpression_cluster_id=C406 | |||
|description=CAGE_peak_at_chr5:64454308..64454313,+ | |description=CAGE_peak_at_chr5:64454308..64454313,+ | ||
|id=chr5:64454308..64454313,+ | |id=chr5:64454308..64454313,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.37e-12!254;CL:0002159!1.74e-11!13;CL:0002166!4.79e-11!3;CL:0002621!7.77e-11!3;CL:0002536!9.26e-08!2;CL:0000244!1.35e-07!4;CL:0000731!1.35e-07!4;CL:0002327!2.58e-07!4 | |ontology_enrichment_celltype=CL:0000066!9.37e-12!254;CL:0002159!1.74e-11!13;CL:0002166!4.79e-11!3;CL:0002621!7.77e-11!3;CL:0002536!9.26e-08!2;CL:0000244!1.35e-07!4;CL:0000731!1.35e-07!4;CL:0002327!2.58e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002166;1.11e-38;3!CL:0002621;4.77e-38;3!CL:0002536;1.44e-25;2!CL:0002159;2.76e-22;14!CL:0000312;1.01e-10;5!CL:0000240;4.37e-09;6!CL:0000311;4.37e-09;6!CL:0000079;4.37e-09;6!CL:0000237;4.37e-09;6!CL:0002077;2.68e-08;34!CL:0002076;1.03e-07;42!CL:1000415;1.50e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,1.11e-38,3;CL:0002621,7.42e-38,3;CL:0002536,8.70e-26,2;CL:0002159,3.30e-22,14;CL:0000066,8.01e-11,253;CL:0000312,1.23e-10,5;CL:0002077,3.93e-09,34;CL:0000240,5.15e-09,6;CL:0000311,5.15e-09,6;CL:0000079,5.15e-09,6;CL:0000237,5.15e-09,6;CL:0000036,5.15e-09,6;CL:0000357,5.15e-09,6;CL:0000114,5.15e-09,6;CL:1000415,1.45e-07,2;CL:0002076,2.19e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000357;4.37e-09;6!CL:0000114;4.37e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000305!2.76e-11!7;UBERON:0001949!7.77e-11!3;UBERON:0005631!7.34e-10!14;UBERON:0000158!7.34e-10!14;UBERON:0004871!7.98e-10!8;UBERON:0001708!2.31e-08!4;UBERON:0001704!2.31e-08!4;UBERON:0001911!2.58e-07!4;UBERON:0005333!2.58e-07!4;UBERON:0008425!2.58e-07!4;UBERON:0005311!2.58e-07!4;UBERON:0003129!4.29e-07!11 | |ontology_enrichment_uberon=UBERON:0000305!2.76e-11!7;UBERON:0001949!7.77e-11!3;UBERON:0005631!7.34e-10!14;UBERON:0000158!7.34e-10!14;UBERON:0004871!7.98e-10!8;UBERON:0001708!2.31e-08!4;UBERON:0001704!2.31e-08!4;UBERON:0001911!2.58e-07!4;UBERON:0005333!2.58e-07!4;UBERON:0008425!2.58e-07!4;UBERON:0005311!2.58e-07!4;UBERON:0003129!4.29e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.77e-38;3!UBERON:0001708;3.29e-29;4!UBERON:0008895;3.29e-29;4!UBERON:0011159;1.63e-23;5!UBERON:0000486;7.27e-17;12!UBERON:0003929;1.01e-16;7!UBERON:0003350;1.04e-14;8!UBERON:0001828;1.04e-14;8!UBERON:0011137;4.98e-11;11!UBERON:0010323;4.98e-11;11!UBERON:0010371;5.92e-10;31!UBERON:0003729;2.83e-09;13!UBERON:0000305;5.47e-08;7!UBERON:0000075;9.58e-08;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.42e-38,3;UBERON:0001708,3.29e-29,4;UBERON:0008895,3.29e-29,4;UBERON:0011159,1.63e-23,5;UBERON:0010188,1.04e-19,6;UBERON:0002539,1.04e-19,6;UBERON:0008816,1.04e-19,6;UBERON:0003350,1.22e-14,8;UBERON:0001828,1.22e-14,8;UBERON:0010323,4.98e-11,11;UBERON:0003729,3.13e-09,13;UBERON:0003102,3.70e-09,99;UBERON:0011137,8.83e-09,14;UBERON:0000305,4.75e-08,7;UBERON:0000033,9.10e-08,56;UBERON:0000075,9.58e-08,16;UBERON:0004871,3.78e-07,8;UBERON:0000153,5.61e-07,62;UBERON:0007811,5.61e-07,62;UBERON:0008814,6.15e-07,18 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.96597234917155,2.37390280405608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0.277064115484183,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.339121184620975,2.31913023795956,3.00020732649918,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,1.20634766893957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74935335947108,11.2548025893236,3.1190521393325,0.179117045405697,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0.434343920002738,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60405176242628,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0.960950336825531,4.72167036229961,0,0,0,0,0,0,0.869932992075073,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,1.29151611801369,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.593929361665277,0.921482106297696,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0.261177619741208,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,2.32460578729448,0,0,0,0,0,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0.906823702049089,0,0,0.179088841081487,0,0,0,0,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.88184358887261,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:64454308..64454313,+ | |short_description=p@chr5:64454308..64454313,+ | ||
}} | }} |
Latest revision as of 15:43, 30 July 2015
Short description: | p@chr5:64454308..64454313, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:64454308..64454313, + |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 1.11e-38 | 3 |
gingival epithelial cell | 7.42e-38 | 3 |
amniotic epithelial cell | 8.70e-26 | 2 |
general ecto-epithelial cell | 3.30e-22 | 14 |
epithelial cell | 8.01e-11 | 253 |
keratinocyte | 1.23e-10 | 5 |
ecto-epithelial cell | 3.93e-09 | 34 |
stratified squamous epithelial cell | 5.15e-09 | 6 |
keratin accumulating cell | 5.15e-09 | 6 |
stratified epithelial cell | 5.15e-09 | 6 |
keratinizing barrier epithelial cell | 5.15e-09 | 6 |
epithelial fate stem cell | 5.15e-09 | 6 |
stratified epithelial stem cell | 5.15e-09 | 6 |
surface ectodermal cell | 5.15e-09 | 6 |
epithelial cell of gall bladder | 1.45e-07 | 2 |
endo-epithelial cell | 2.19e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.42e-38 | 3 |
jaw skeleton | 3.29e-29 | 4 |
splanchnocranium | 3.29e-29 | 4 |
primary subdivision of cranial skeletal system | 1.63e-23 | 5 |
protuberance | 1.04e-19 | 6 |
pharyngeal arch | 1.04e-19 | 6 |
embryonic head | 1.04e-19 | 6 |
epithelium of mucosa | 1.22e-14 | 8 |
gingiva | 1.22e-14 | 8 |
cranial skeletal system | 4.98e-11 | 11 |
mouth mucosa | 3.13e-09 | 13 |
surface structure | 3.70e-09 | 99 |
axial skeletal system | 8.83e-09 | 14 |
amnion | 4.75e-08 | 7 |
head | 9.10e-08 | 56 |
subdivision of skeletal system | 9.58e-08 | 16 |
somatic layer of lateral plate mesoderm | 3.78e-07 | 8 |
anterior region of body | 5.61e-07 | 62 |
craniocervical region | 5.61e-07 | 62 |
pharyngeal arch system | 6.15e-07 | 18 |