FFCP PHASE1:Hg19::chr5:54070798..54070804,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:54070798..54070804,+ to FFCP PHASE1:Hg19::chr5:54070798..54070804,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:54070798..54070804,+ | |||
|coexpression_cluster_id=C2175 | |||
|description=CAGE_peak_at_chr5:54070798..54070804,+ | |||
|id=chr5:54070798..54070804,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.75e-78!42;CL:0000860!2.17e-72!45;CL:0000766!1.80e-51!76;CL:0002194!8.79e-51!63;CL:0000576!8.79e-51!63;CL:0000040!8.79e-51!63;CL:0000559!8.79e-51!63;CL:0002009!6.23e-49!65;CL:0000839!9.19e-45!70;CL:0000557!5.34e-44!71;CL:0000738!9.45e-42!140;CL:0000763!5.14e-39!112;CL:0000049!5.14e-39!112;CL:0002087!2.18e-36!119;CL:0000037!4.74e-33!172;CL:0000566!4.74e-33!172;CL:0000988!1.62e-30!182;CL:0002032!6.46e-30!165;CL:0000837!6.46e-30!165;CL:0002031!7.89e-29!124;CL:0002393!3.31e-26!9;CL:0002397!3.31e-26!9;CL:0000134!1.20e-17!358;CL:0002320!5.02e-17!365;CL:0000219!7.66e-15!390;CL:0000048!1.18e-13!430;CL:0000723!2.91e-13!436;CL:0000034!9.39e-13!444;CL:0000842!4.99e-10!3;CL:0000875!7.11e-10!3;CL:0002396!7.11e-10!3;CL:0000767!1.31e-09!3;CL:0000224!1.34e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-41;33!CL:0002057;1.16e-41;33!CL:0000576;3.85e-37;48!CL:0000473;8.11e-30;39!CL:0000234;8.11e-30;39!CL:0000766;1.42e-28;69!CL:0002393;2.77e-26;6!CL:0002397;2.77e-26;6!CL:0000226;6.80e-20;3!CL:0000842;6.80e-20;3!CL:0000875;2.74e-19;3!CL:0002396;2.74e-19;3!CL:0000767;8.19e-19;3!CL:0002087;6.00e-17;104!CL:0000763;2.23e-14;100!CL:0000094;2.33e-12;8!CL:0000738;1.72e-09;136!CL:0000081;4.97e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.69e-82,42;CL:0002057,6.69e-82,42;CL:0000473,4.28e-71,48;CL:0000234,4.28e-71,48;CL:0000766,2.38e-62,72;CL:0002194,5.86e-56,59;CL:0000576,5.86e-56,59;CL:0000040,5.86e-56,59;CL:0000559,5.86e-56,59;CL:0002009,5.27e-54,61;CL:0000839,1.25e-49,66;CL:0000557,7.85e-49,67;CL:0002393,1.26e-43,9;CL:0002397,1.26e-43,9;CL:0000738,9.29e-42,136;CL:0000763,4.21e-40,108;CL:0000049,4.21e-40,108;CL:0002087,1.25e-37,115;CL:0000037,7.32e-33,168;CL:0000988,6.20e-31,177;CL:0002031,8.42e-28,120;CL:0002032,1.92e-27,161;CL:0000837,1.92e-27,161;CL:0000226,9.98e-20,3;CL:0000842,9.98e-20,3;CL:0000875,2.14e-19,3;CL:0002396,2.14e-19,3;CL:0000767,7.95e-19,3;CL:0000134,8.31e-13,354;CL:0002320,1.88e-12,361;CL:0000094,2.33e-12,8;CL:0000219,3.37e-11,386;CL:0000048,1.15e-09,427;CL:0000723,1.88e-09,433;CL:0000034,3.54e-09,441;CL:0000081,4.97e-09,11 | |||
|ontology_enrichment_development_v019=CL:0002057;2.80e-55;42!CL:0000049;4.84e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.63e-38!80;UBERON:0002390!1.11e-37!102;UBERON:0003061!1.11e-37!102;UBERON:0001474!1.17e-34!86;UBERON:0002193!2.38e-33!112;UBERON:0004765!7.98e-30!101;UBERON:0001434!7.98e-30!101;UBERON:0002405!4.90e-25!115;UBERON:0002204!3.41e-16!167;UBERON:0002384!3.52e-16!375;UBERON:0003081!7.87e-16!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.40e-42,76;UBERON:0002390,1.45e-41,98;UBERON:0003061,1.45e-41,98;UBERON:0001474,3.63e-39,82;UBERON:0002193,2.70e-37,108;UBERON:0004765,2.60e-35,90;UBERON:0002405,4.92e-34,93;UBERON:0001434,2.38e-31,100;UBERON:0003081,1.47e-17,203;UBERON:0002204,5.92e-17,167;UBERON:0002384,5.75e-12,371;UBERON:0000926,1.74e-09,315;UBERON:0004120,1.74e-09,315;UBERON:0006603,1.74e-09,315 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,1.15148819429164,1.70297735647684,0,0,0,0,0,0,1.66198622559563,2.60707781711184,0.868043482863407,0,0,0,0,0.755751887377619,0.242584061187816,1.85943229524548,0.411167888021826,1.54853185447552,0.863077176966451,0.256160706529101,0.709446689665756,3.44745680736619,1.29096936716765,2.70852973188684,0.376484679085209,0.545812300115692,3.14612878223118,4.89734227793444,5.45579346029359,4.47535988059329,0.329851300186716,0,0,4.06292934080018,3.40431134814684,6.85104473895132,0.251248665256743,0,1.08594422352558,1.21079900526674,4.41933163185078,4.74693581161327,2.11255286311942,9.99240209835705,2.30624510059213,0,0,0,4.56020389985998,1.9891667719909,1.27864907635244,1.75996244461323,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.529636723252875,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,5.39285502046542,4.69601254335155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0.919036730290385,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.531459361253452,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,1.15148819429164,1.70297735647684,0,0,0,0,0,0,1.66198622559563,2.60707781711184,0.868043482863407,0,0,0,0,0.755751887377619,0.242584061187816,1.85943229524548,0.411167888021826,1.54853185447552,0.863077176966451,0.256160706529101,0.709446689665756,3.44745680736619,1.29096936716765,2.70852973188684,0.376484679085209,0.545812300115692,3.14612878223118,4.89734227793444,5.45579346029359,4.47535988059329,0.329851300186716,0,0,4.06292934080018,3.40431134814684,6.85104473895132,0.251248665256743,0,1.08594422352558,1.21079900526674,4.41933163185078,4.74693581161327,2.11255286311942,9.99240209835705,2.30624510059213,0,0,0,4.56020389985998,1.9891667719909,1.27864907635244,1.75996244461323,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.529636723252875,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,5.39285502046542,4.69601254335155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0.919036730290385,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.531459361253452,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:54070798..54070804,+ | |||
}} | }} |
Latest revision as of 15:14, 30 July 2015
Short description: | p@chr5:54070798..54070804, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:54070798..54070804, + |
Coexpression cluster: | C2175_CD14_CD14CD16_splenic_migratory_Peripheral_Basophils_Whole |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.40e-42 | 76 |
hematopoietic system | 1.45e-41 | 98 |
blood island | 1.45e-41 | 98 |
bone element | 3.63e-39 | 82 |
hemolymphoid system | 2.70e-37 | 108 |
skeletal element | 2.60e-35 | 90 |
immune system | 4.92e-34 | 93 |
skeletal system | 2.38e-31 | 100 |
lateral plate mesoderm | 1.47e-17 | 203 |
musculoskeletal system | 5.92e-17 | 167 |
connective tissue | 5.75e-12 | 371 |
mesoderm | 1.74e-09 | 315 |
mesoderm-derived structure | 1.74e-09 | 315 |
presumptive mesoderm | 1.74e-09 | 315 |