FFCP PHASE1:Hg19::chr5:178259802..178259818,-: Difference between revisions
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|id=chr5:178259802..178259818,-
|short_description=p@chr5:178259802..178259818,-
|description=CAGE_peak_at_chr5:178259802..178259818,-
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:178259802..178259818,- | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_at_chr5:178259802..178259818,- | |||
|id=chr5:178259802..178259818,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.81e-40;5!CL:0000540;1.09e-15;6!CL:0000404;1.09e-15;6!CL:0002321;6.43e-14;15!CL:0000322;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.05e-15,6;CL:0000031,1.05e-15,6;CL:0000404,1.05e-15,6;CL:0000047,4.94e-12,8;CL:0000133,3.31e-09,59;CL:0000322,1.12e-08,3;CL:0000221,1.31e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.09e-15;6 | |||
|ontology_enrichment_disease=DOID:162!2.17e-11!235;DOID:14566!5.05e-11!239;DOID:0050687!1.47e-10!143;DOID:3905!2.38e-09!9;DOID:169!1.76e-08!6;DOID:3095!9.99e-08!22;DOID:2994!9.99e-08!22;DOID:1325!3.94e-07!7;DOID:3904!3.94e-07!7 | |||
|ontology_enrichment_disease_v019=DOID:169;1.31e-33;6!DOID:171;1.67e-20;10!DOID:3908;1.77e-18;5!DOID:3910;2.74e-12;2!DOID:3905;1.02e-10;9!DOID:3095;1.06e-09;22!DOID:2994;1.06e-09;22!DOID:4556;1.26e-08;3!DOID:1324;8.58e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.83e-33,6;DOID:171,2.04e-20,10;DOID:3908,1.77e-18,5;DOID:3910,2.32e-12,2;DOID:3905,1.02e-10,9;DOID:3095,1.16e-09,22;DOID:2994,1.16e-09,22;DOID:4556,1.40e-08,3;DOID:1324,8.58e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0000013!4.27e-10!5;UBERON:0002410!4.27e-10!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.81e-40;5!UBERON:0002410;3.81e-40;5!UBERON:0000010;1.08e-22;8!UBERON:0004903;2.74e-12;2!UBERON:0002173;2.74e-12;2!UBERON:0002186;2.74e-12;2!UBERON:0004821;1.26e-08;3!UBERON:0007499;1.26e-08;3!UBERON:0003215;1.26e-08;3!UBERON:0010368;1.26e-08;3!UBERON:0009911;1.26e-08;3!UBERON:0002299;1.26e-08;3!UBERON:0006524;1.26e-08;3!UBERON:0008874;1.26e-08;3!UBERON:0002169;1.26e-08;3!UBERON:0004894;1.26e-08;3!UBERON:0009856;8.85e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,5.69e-40,5;UBERON:0002410,5.69e-40,5;UBERON:0000010,1.35e-22,8;UBERON:0004903,2.32e-12,2;UBERON:0002173,2.32e-12,2;UBERON:0002186,2.32e-12,2;UBERON:0004821,1.12e-08,3;UBERON:0003215,1.12e-08,3;UBERON:0010368,1.12e-08,3;UBERON:0009911,1.12e-08,3;UBERON:0002299,1.12e-08,3;UBERON:0006524,1.12e-08,3;UBERON:0008874,1.12e-08,3;UBERON:0002169,1.12e-08,3;UBERON:0004894,1.12e-08,3 | |||
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|short_description=p@chr5:178259802..178259818,- | |||
}} | }} |
Latest revision as of 13:44, 30 July 2015
Short description: | p@chr5:178259802..178259818, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:178259802..178259818, - |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.05e-15 | 6 |
neuroblast | 1.05e-15 | 6 |
electrically signaling cell | 1.05e-15 | 6 |
neuronal stem cell | 4.94e-12 | 8 |
neurectodermal cell | 3.31e-09 | 59 |
pneumocyte | 1.12e-08 | 3 |
ectodermal cell | 1.31e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 5.69e-40 | 5 |
autonomic nervous system | 5.69e-40 | 5 |
peripheral nervous system | 1.35e-22 | 8 |
bronchoalveolar duct junction | 2.32e-12 | 2 |
alveolar duct | 2.32e-12 | 2 |
bronchiole | 2.32e-12 | 2 |
pulmonary alveolus epithelium | 1.12e-08 | 3 |
alveolus | 1.12e-08 | 3 |
pulmonary lobule | 1.12e-08 | 3 |
lobule | 1.12e-08 | 3 |
alveolus of lung | 1.12e-08 | 3 |
alveolar system | 1.12e-08 | 3 |
pulmonary acinus | 1.12e-08 | 3 |
alveolar sac | 1.12e-08 | 3 |
alveolar wall | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.83e-33 | 6 |
neuroectodermal tumor | 2.04e-20 | 10 |
non-small cell lung carcinoma | 1.77e-18 | 5 |
lung adenocarcinoma | 2.32e-12 | 2 |
lung carcinoma | 1.02e-10 | 9 |
germ cell and embryonal cancer | 1.16e-09 | 22 |
germ cell cancer | 1.16e-09 | 22 |
lung large cell carcinoma | 1.40e-08 | 3 |
lung cancer | 8.58e-07 | 15 |