FFCP PHASE1:Hg19::chr4:77955074..77955084,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:77955074..77955084,+ | |||
|description=CAGE_peak_at_chr4:77955074..77955084,+ | |description=CAGE_peak_at_chr4:77955074..77955084,+ | ||
|id=chr4:77955074..77955084,+ | |id=chr4:77955074..77955084,+ | ||
|ontology_enrichment_celltype=CL:0000057!5.61e-17!75;CL:0000055!4.16e-15!180;CL:0002620!3.82e-12!23;CL:0000136!2.53e-08!15 | |ontology_enrichment_celltype=CL:0000057!5.61e-17!75;CL:0000055!4.16e-15!180;CL:0002620!3.82e-12!23;CL:0000136!2.53e-08!15 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.45e-22;23!CL:0000136;1.36e-14;13!CL:0000057;6.90e-11;73!CL:0002334;5.04e-09;12!CL:0002615;7.02e-09;3!CL:0000135;1.86e-08;3!CL:0000388;1.86e-08;3!CL:0002579;2.97e-08;3!CL:0002580;7.39e-08;3!CL:0002504;1.00e-07;3!CL:1000279;1.00e-07;3!CL:1000280;1.00e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.96e-27,76;CL:0002620,1.37e-22,23;CL:0000136,6.30e-18,15;CL:0000048,3.51e-12,427;CL:0000723,9.00e-12,433;CL:0000034,3.03e-11,441;CL:0002334,2.76e-09,12;CL:0002615,8.33e-09,3;CL:0002320,1.08e-08,361;CL:0000134,1.32e-08,354;CL:0000135,1.41e-08,3;CL:0000388,1.41e-08,3;CL:0002579,2.55e-08,3;CL:0002580,3.33e-08,3;CL:0002504,1.17e-07,3;CL:1000279,1.17e-07,3;CL:1000280,1.17e-07,3;CL:0000219,3.63e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.62e-11;5!DOID:450;1.62e-11;5!DOID:66;1.62e-11;5!DOID:423;1.62e-11;5!DOID:0080000;1.62e-11;5!DOID:11722;1.62e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,8.74e-12,5;DOID:450,8.74e-12,5;DOID:66,8.74e-12,5;DOID:423,8.74e-12,5;DOID:0080000,8.74e-12,5;DOID:11722,8.74e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.26e-10!365;UBERON:0002199!1.57e-08!45;UBERON:0002416!1.57e-08!45;UBERON:0002097!2.78e-07!40;UBERON:0003102!3.41e-07!95;UBERON:0000914!4.22e-07!83;UBERON:0002329!4.22e-07!83;UBERON:0003077!4.22e-07!83;UBERON:0003059!4.22e-07!83;UBERON:0007282!4.22e-07!83;UBERON:0009618!4.22e-07!83;UBERON:0007285!4.22e-07!83 | |ontology_enrichment_uberon=UBERON:0000475!2.26e-10!365;UBERON:0002199!1.57e-08!45;UBERON:0002416!1.57e-08!45;UBERON:0002097!2.78e-07!40;UBERON:0003102!3.41e-07!95;UBERON:0000914!4.22e-07!83;UBERON:0002329!4.22e-07!83;UBERON:0003077!4.22e-07!83;UBERON:0003059!4.22e-07!83;UBERON:0007282!4.22e-07!83;UBERON:0009618!4.22e-07!83;UBERON:0007285!4.22e-07!83 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.93e-15;6!UBERON:0002358;1.93e-15;6!UBERON:0003684;1.93e-15;6!UBERON:0001178;1.93e-15;6!UBERON:0002199;2.83e-10;46!UBERON:0002416;2.83e-10;46!UBERON:0004457;5.46e-10;9!UBERON:0000042;5.46e-10;9!UBERON:0002097;5.30e-09;41!UBERON:0003102;1.85e-08;50!UBERON:0007846;1.86e-08;3!UBERON:0000043;1.86e-08;3!UBERON:0007845;1.86e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.95e-15,6;UBERON:0002358,1.95e-15,6;UBERON:0003684,1.95e-15,6;UBERON:0001178,1.95e-15,6;UBERON:0002199,1.31e-13,46;UBERON:0002416,1.31e-13,46;UBERON:0002097,2.06e-12,41;UBERON:0002384,1.11e-08,371;UBERON:0007846,1.41e-08,3;UBERON:0000043,1.41e-08,3;UBERON:0007845,1.41e-08,3;UBERON:0003102,4.11e-08,99;UBERON:0004457,2.89e-07,12;UBERON:0000042,2.89e-07,12 | |||
|phase1_expression=2.54349730978779,3.42560838225573,2.25527046553554,7.00513088471913,3.12872766099101,3.48935409640147,2.53299878168311,0,1.04474251279935,0,0,0,0,0.990130823680373,0.331397375727916,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0,1.43117993565528,0.547497700291537,0.251085279189606,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,1.02290049474824,0.361439152384566,0,1.15877215168659,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0.261958150995425,0,0,0,0.348259474598534,0.531831842075461,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.417989933073621,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,2.98183171017191,1.13967460498122,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0,0,1.21239604862719,0.326923806226917,0.302714855289863,1.72852777344,0,1.24864030732128,1.1409436430889,0.747243402759005,0.117434498643765,0,0.140450806702248,0.408308342509787,1.10550885580591,0.309977343527296,1.18800285728205,2.22540236350701,0,0,1.34668891163253,0.250237039743928,0,0,0.919463387397059,0.45071417671979,0.113432183160021,1.61450672119976,2.56268866582281,1.69545520927649,1.20036438433761,1.23663035086127,2.06112432036503,2.97786970130544,0.843881661206331,1.36411807225678,1.51460264546469,3.40584624976508,1.13152239773168,2.4850671476163,2.01504196455281,1.52604533079439,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0.117408694235822,0.288732895522148,0.462985512576611,0.380508304469197,0,0,0,0,0.148631162288728,0.93733833986777,0,0,0.0895585227028483,0,0,0,0.264145302039678,0,0,0.25248486685276,0.063497894292169,0,0,0,0.205654985406647,0.300343057843917,0,0.112131084345361,0,0.2933531432838,0.387815147273333,0,0.845302752556,2.92531928243358,1.04007436911366,0,0,0.266422179016099,1.57275793023962,0.542621605391443,0,0.65147236858747,1.77695974371273,0.791951872933429,0.301439377059586,0,0.399891964728228,0,0.502257091432126,4.21667878966063,2.39624855491583,0,0,1.01346914667305,1.02738161275192,0.358121926479791,0,0,0,0,0,0,1.54657762555539,0,0,0,0,0,1.10422342547226,0,0.271265023699736,1.66376689224646,0.892144943985809,3.46945313074656,1.17141414992713,0,0,0,0.664225598535437,0,2.08520674723399,0,0,0,0,0,0,0,0,1.73675465473144,1.38115775959256,3.64858122762996,2.17836553734692,1.53512174720011,3.37793234401576,1.48418066444991,0.616838775210622,0.355123450626254,0.164254312027618,0,0,0,0,0,0.803701137152247,0.546273504020151,0.917870904715969,0,0.15403067420883,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0,3.21367859688319,0,0.154048617114644,0,0.413509717453592,0.537101224341368,0.725083469571143,0.255679882248303,0.267096106940212,0,0,0,0,2.78907329578371,1.25924938732256,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,1.2655176988749,1.14378116354295,0,0.42793898803392,0,0,1.61885211824983,2.19629623788844,1.06031162111118,0.202182481573316,0,0,0,0.243713489631284,0,0.545999645631943,0.989838023675989,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0.281695602532241,0.430234056612155,1.27723753317057,0,0.354761064070598,0.844430541190656,0.329294892959902,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0.0711418433484141,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0.121360521749513,0,0,0.23874448473769,0.296964680832639,0,0,0.422008249231538,0.333926115068718,0,0,0.597743964753209,0.276283915531148,0,0.20453736500431,0,1.55519793830904,0,0,0,0.197286811273867,0,0,0,0.649376687132959,1.99613798001194,0,0,0.724999575434793,0,0,0,0,0,0.347249989866585,0,0.482385754501632,0,0,0.295547618953547,0.438770794307945,0,0,0.461701551022782,0.341826167541004,0,0.179515288819544,0.108647371922008,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0.19606253431774,0,0,0,0.421996129056054,0.326465616318295,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.242780379534093,0.394584402849391,0,0.61214552326098,0.189559738885464,0.150323419414493,0,0,0,0.313932918407225,0,0,0.416024019039416,0,0,0,0,0.171986032471617,0,0,0,0.0969890164884194,0,0.90392296312213,0.137041924646751,0,0.316553979779393,0.195551382734803,0,0.213452994739353,0,0,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0.0824158583811665,0,0,0,0,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0.864221491201268,0.979762080328227,0,0,0.681552087141687,0,0,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| ||
|short_description=p@chr4:77955074..77955084,+ | |short_description=p@chr4:77955074..77955084,+ | ||
}} | }} |
Latest revision as of 07:02, 30 July 2015
Short description: | p@chr4:77955074..77955084, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:77955074..77955084, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.96e-27 | 76 |
skin fibroblast | 1.37e-22 | 23 |
fat cell | 6.30e-18 | 15 |
multi fate stem cell | 3.51e-12 | 427 |
somatic stem cell | 9.00e-12 | 433 |
stem cell | 3.03e-11 | 441 |
preadipocyte | 2.76e-09 | 12 |
adipocyte of omentum tissue | 8.33e-09 | 3 |
connective tissue cell | 1.08e-08 | 361 |
mesenchymal cell | 1.32e-08 | 354 |
fibrocyte | 1.41e-08 | 3 |
tendon cell | 1.41e-08 | 3 |
omentum preadipocyte | 2.55e-08 | 3 |
preadipocyte of the breast | 3.33e-08 | 3 |
enteric smooth muscle cell | 1.17e-07 | 3 |
smooth muscle cell of large intestine | 1.17e-07 | 3 |
smooth muscle cell of colon | 1.17e-07 | 3 |
motile cell | 3.63e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.95e-15 | 6 |
peritoneum | 1.95e-15 | 6 |
abdominal cavity | 1.95e-15 | 6 |
visceral peritoneum | 1.95e-15 | 6 |
integument | 1.31e-13 | 46 |
integumental system | 1.31e-13 | 46 |
skin of body | 2.06e-12 | 41 |
connective tissue | 1.11e-08 | 371 |
dense regular connective tissue | 1.41e-08 | 3 |
tendon | 1.41e-08 | 3 |
regular connective tissue | 1.41e-08 | 3 |
surface structure | 4.11e-08 | 99 |
cavity lining | 2.89e-07 | 12 |
serous membrane | 2.89e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 8.74e-12 | 5 |
myotonic disease | 8.74e-12 | 5 |
muscle tissue disease | 8.74e-12 | 5 |
myopathy | 8.74e-12 | 5 |
muscular disease | 8.74e-12 | 5 |
myotonic dystrophy | 8.74e-12 | 5 |