FFCP PHASE1:Hg19::chr4:55234775..55234779,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:55234775..55234779,- | |||
|coexpression_cluster_id=C2052 | |||
|description=CAGE_peak_at_chr4:55234775..55234779,- | |description=CAGE_peak_at_chr4:55234775..55234779,- | ||
|id=chr4:55234775..55234779,- | |id=chr4:55234775..55234779,- | ||
|ontology_enrichment_celltype=CL:0002057!9.63e-99!42;CL:0000860!1.92e-91!45;CL:0000839!4.47e-67!70;CL:0000557!5.52e-66!71;CL:0000763!4.98e-65!112;CL:0000049!4.98e-65!112;CL:0002194!1.68e-64!63;CL:0000576!1.68e-64!63;CL:0000040!1.68e-64!63;CL:0000559!1.68e-64!63;CL:0000766!2.69e-64!76;CL:0002009!3.24e-62!65;CL:0000037!3.65e-49!172;CL:0000566!3.65e-49!172;CL:0000988!1.03e-45!182;CL:0002032!1.52e-43!165;CL:0000837!1.52e-43!165;CL:0002087!7.97e-39!119;CL:0000738!1.02e-38!140;CL:0002031!9.18e-37!124;CL:0000134!3.10e-18!358;CL:0002320!1.29e-17!365;CL:0000219!3.07e-16!390;CL:0002393!3.49e-15!9;CL:0002397!3.49e-15!9;CL:0000034!2.63e-14!444;CL:0000048!1.51e-13!430;CL:0000723!3.64e-13!436;CL:0000842!9.20e-10!3;CL:0000224!2.07e-07!4;CL:0002371!6.48e-07!591;CL:0000144!6.73e-07!625 | |ontology_enrichment_celltype=CL:0002057!9.63e-99!42;CL:0000860!1.92e-91!45;CL:0000839!4.47e-67!70;CL:0000557!5.52e-66!71;CL:0000763!4.98e-65!112;CL:0000049!4.98e-65!112;CL:0002194!1.68e-64!63;CL:0000576!1.68e-64!63;CL:0000040!1.68e-64!63;CL:0000559!1.68e-64!63;CL:0000766!2.69e-64!76;CL:0002009!3.24e-62!65;CL:0000037!3.65e-49!172;CL:0000566!3.65e-49!172;CL:0000988!1.03e-45!182;CL:0002032!1.52e-43!165;CL:0000837!1.52e-43!165;CL:0002087!7.97e-39!119;CL:0000738!1.02e-38!140;CL:0002031!9.18e-37!124;CL:0000134!3.10e-18!358;CL:0002320!1.29e-17!365;CL:0000219!3.07e-16!390;CL:0002393!3.49e-15!9;CL:0002397!3.49e-15!9;CL:0000034!2.63e-14!444;CL:0000048!1.51e-13!430;CL:0000723!3.64e-13!436;CL:0000842!9.20e-10!3;CL:0000224!2.07e-07!4;CL:0002371!6.48e-07!591;CL:0000144!6.73e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.45e-55;33!CL:0002057;4.45e-55;33!CL:0000473;7.26e-38;39!CL:0000234;7.26e-38;39!CL:0000576;2.80e-32;48!CL:0000766;1.86e-22;69!CL:0000763;4.85e-18;100!CL:0002087;4.83e-12;104!CL:0002393;9.35e-10;6!CL:0002397;9.35e-10;6!CL:0000037;9.90e-08;1!CL:0001024;9.90e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.25e-63,42;CL:0002057,2.25e-63,42;CL:0000473,6.88e-55,48;CL:0000234,6.88e-55,48;CL:0000763,2.37e-46,108;CL:0000049,2.37e-46,108;CL:0000839,1.28e-45,66;CL:0000766,2.67e-45,72;CL:0000557,7.04e-45,67;CL:0002194,5.26e-43,59;CL:0000576,5.26e-43,59;CL:0000040,5.26e-43,59;CL:0000559,5.26e-43,59;CL:0002009,1.80e-41,61;CL:0000037,1.90e-32,168;CL:0000988,1.62e-30,177;CL:0002032,2.37e-29,161;CL:0000837,2.37e-29,161;CL:0000738,6.77e-24,136;CL:0002031,4.44e-23,120;CL:0002087,3.31e-22,115;CL:0000134,2.30e-12,354;CL:0002320,5.21e-12,361;CL:0000219,9.37e-11,386;CL:0000034,1.16e-09,441;CL:0000048,3.23e-09,427;CL:0000723,5.28e-09,433;CL:0001024,9.91e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002057;1.49e-44;42!CL:0000049;2.23e-10;108 | |||
|ontology_enrichment_disease=DOID:8692!9.06e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:1036;3.49e-12;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,3.49e-12,8 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.18e-60!80;UBERON:0001474!1.15e-55!86;UBERON:0002390!9.20e-53!102;UBERON:0003061!9.20e-53!102;UBERON:0002193!5.16e-47!112;UBERON:0004765!9.10e-46!101;UBERON:0001434!9.10e-46!101;UBERON:0002405!6.04e-41!115;UBERON:0002204!2.80e-23!167;UBERON:0003081!7.42e-20!216;UBERON:0002384!9.10e-17!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.06e-43,76;UBERON:0001474,2.31e-39,82;UBERON:0004765,1.84e-35,90;UBERON:0002390,3.62e-35,98;UBERON:0003061,3.62e-35,98;UBERON:0002405,3.61e-34,93;UBERON:0002193,1.82e-31,108;UBERON:0001434,1.88e-31,100;UBERON:0002204,6.96e-17,167;UBERON:0003081,2.23e-14,203;UBERON:0002384,1.59e-11,371;UBERON:0000926,2.03e-07,315;UBERON:0004120,2.03e-07,315;UBERON:0006603,2.03e-07,315 | |||
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|short_description=p@chr4:55234775..55234779,- | |short_description=p@chr4:55234775..55234779,- | ||
}} | }} |
Latest revision as of 05:41, 30 July 2015
Short description: | p@chr4:55234775..55234779, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:55234775..55234779, - |
Coexpression cluster: | C2052_CD133_CD34_CD14_Basophils_chronic_Peripheral_leukemia |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.25e-63 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.25e-63 | 42 |
defensive cell | 6.88e-55 | 48 |
phagocyte | 6.88e-55 | 48 |
myeloid cell | 2.37e-46 | 108 |
common myeloid progenitor | 2.37e-46 | 108 |
myeloid lineage restricted progenitor cell | 1.28e-45 | 66 |
myeloid leukocyte | 2.67e-45 | 72 |
granulocyte monocyte progenitor cell | 7.04e-45 | 67 |
monopoietic cell | 5.26e-43 | 59 |
monocyte | 5.26e-43 | 59 |
monoblast | 5.26e-43 | 59 |
promonocyte | 5.26e-43 | 59 |
macrophage dendritic cell progenitor | 1.80e-41 | 61 |
hematopoietic stem cell | 1.90e-32 | 168 |
hematopoietic cell | 1.62e-30 | 177 |
hematopoietic oligopotent progenitor cell | 2.37e-29 | 161 |
hematopoietic multipotent progenitor cell | 2.37e-29 | 161 |
leukocyte | 6.77e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 4.44e-23 | 120 |
nongranular leukocyte | 3.31e-22 | 115 |
mesenchymal cell | 2.30e-12 | 354 |
connective tissue cell | 5.21e-12 | 361 |
motile cell | 9.37e-11 | 386 |
stem cell | 1.16e-09 | 441 |
multi fate stem cell | 3.23e-09 | 427 |
somatic stem cell | 5.28e-09 | 433 |
CD34-positive, CD38-negative hematopoietic stem cell | 9.91e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.06e-43 | 76 |
bone element | 2.31e-39 | 82 |
skeletal element | 1.84e-35 | 90 |
hematopoietic system | 3.62e-35 | 98 |
blood island | 3.62e-35 | 98 |
immune system | 3.61e-34 | 93 |
hemolymphoid system | 1.82e-31 | 108 |
skeletal system | 1.88e-31 | 100 |
musculoskeletal system | 6.96e-17 | 167 |
lateral plate mesoderm | 2.23e-14 | 203 |
connective tissue | 1.59e-11 | 371 |
mesoderm | 2.03e-07 | 315 |
mesoderm-derived structure | 2.03e-07 | 315 |
presumptive mesoderm | 2.03e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 3.49e-12 | 8 |