FFCP PHASE1:Hg19::chr4:28623229..28623232,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:28623229..28623232,+ | |||
|coexpression_cluster_id=C4406 | |||
|description=CAGE_peak_at_chr4:28623229..28623232,+ | |description=CAGE_peak_at_chr4:28623229..28623232,+ | ||
|id=chr4:28623229..28623232,+ | |id=chr4:28623229..28623232,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000515;4.70e-17;3!CL:0002580;1.43e-16;3!CL:0000056;4.92e-13;4!CL:0000680;7.94e-08;7!CL:0002570;8.72e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,1.88e-16,3;CL:0000515,4.78e-13,4;CL:0002570,7.88e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000515;4.92e-13;4!UBERON:0005425;6.42e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4235;2.05e-13;1!DOID:3571;6.42e-13;1!DOID:3350;4.29e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,2.06e-13,1;DOID:3571,7.68e-13,1;DOID:3350,4.69e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;6.42e-13;1!UBERON:0001282;6.42e-13;1!UBERON:0001785;6.42e-13;1!UBERON:0002464;6.42e-13;1!UBERON:0004904;6.42e-13;1!UBERON:0002426;6.42e-13;1!UBERON:0003831;6.42e-13;1!UBERON:0003898;6.42e-13;1!UBERON:0004830;6.42e-13;1!UBERON:0009842;6.42e-13;1!UBERON:0003704;6.42e-13;1!UBERON:0001021;6.42e-13;1!UBERON:0003830;6.42e-13;1!UBERON:0005175;6.42e-13;1!UBERON:0001774;6.42e-13;1!UBERON:0001103;6.42e-13;1!UBERON:0001171;6.42e-13;1!UBERON:0001172;6.42e-13;1!UBERON:0001134;4.52e-12;16!UBERON:0002036;4.52e-12;16!UBERON:0001443;3.91e-10;11!UBERON:0002385;3.72e-09;31!UBERON:0001015;3.72e-09;31!UBERON:0000383;3.72e-09;31!UBERON:0003714;4.29e-07;2!UBERON:0005162;4.29e-07;2!UBERON:0000122;4.29e-07;2!UBERON:0005090;4.29e-07;2!UBERON:0001630;4.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,6.06e-13,1;UBERON:0003831,6.06e-13,1;UBERON:0003898,6.06e-13,1;UBERON:0004830,6.06e-13,1;UBERON:0003830,6.06e-13,1;UBERON:0005175,6.06e-13,1;UBERON:0001774,6.06e-13,1;UBERON:0001103,6.06e-13,1;UBERON:0010084,6.06e-13,1;UBERON:0000941,8.64e-13,1;UBERON:0001785,8.64e-13,1;UBERON:0002464,8.64e-13,1;UBERON:0004904,8.64e-13,1;UBERON:0001021,8.64e-13,1;UBERON:0003902,8.64e-13,1;UBERON:0005425,8.64e-13,1;UBERON:0001282,1.09e-12,1;UBERON:0009842,1.09e-12,1;UBERON:0003704,1.09e-12,1;UBERON:0001171,1.09e-12,1;UBERON:0001172,1.09e-12,1;UBERON:0001443,4.29e-10,11;UBERON:0005090,4.17e-07,2;UBERON:0001630,4.17e-07,2;UBERON:0003714,4.98e-07,2;UBERON:0005162,4.98e-07,2;UBERON:0000122,4.98e-07,2 | |||
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|phase1_expression=0.363356758541113,0.856402095563933,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425208599930087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0,0,0,0,0,0.386521706326594,0.545492241181669,0.573609190778008,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.201057944823262,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,1.51183915378974,0.283550194484773,0.716468181622786,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.690605505112,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,0,9.26600362672507,0.821905290201534,4.65558504423729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0.0868836144680828,0,0,0,0,0,0,0,0,1.24053903909388,2.455391572609,0.841980283299221,0.256278298511402,0,0.804269605718038,0,0,0,0,0.519254429183621,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0.307007349452259,1.65403886981437,0.429680979473094,0.580066775656914,0.596586391912706,0,0.165284915360978,0.384380134730212,0,0,0,4.40737285562896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,1.67121139316383,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,7.97695723516807,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,1.02547850262301,0,0,0,0.957003479195758,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83309043480088,0,0,0,0,1.60515529459758,0.234264445725339,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.189932387867636,0.195551382734803,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,1.44119953416961,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0.326587360109409,0,0.903017728242729,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0.285465333544967,0,0,0,0.597019211547496,3.97312626740282,0,0,0.251567901752575,0,0,0,0,0.147855149989634,0.318593534327405,0.449803112163605,0.155262956876259,0.414706207840855,0.53168342911599,0.521745061811734,0,0.761610424337591,0,0.545545977607678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.798169295285756,0.41023272848151,0.252071696221718,0,0,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0,0.253663240775627,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26774055532232,0,0,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0,0.371995018166751,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr4:28623229..28623232,+ | |short_description=p@chr4:28623229..28623232,+ | ||
}} | }} |
Latest revision as of 04:43, 30 July 2015
Short description: | p@chr4:28623229..28623232, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:28623229..28623232, + |
Coexpression cluster: | C4406_astrocytoma_Myoblast_mesenchymal_spindle_Smooth_Preadipocyte_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.88e-16 | 3 |
skeletal muscle myoblast | 4.78e-13 | 4 |
mesenchymal stem cell of adipose | 7.88e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 6.06e-13 | 1 |
respiratory system muscle | 6.06e-13 | 1 |
skeletal muscle of trunk | 6.06e-13 | 1 |
respiratory system skeletal muscle | 6.06e-13 | 1 |
thoracic segment muscle | 6.06e-13 | 1 |
chest organ | 6.06e-13 | 1 |
muscle of trunk | 6.06e-13 | 1 |
diaphragm | 6.06e-13 | 1 |
future diaphragm | 6.06e-13 | 1 |
cranial nerve II | 8.64e-13 | 1 |
cranial nerve | 8.64e-13 | 1 |
nerve trunk | 8.64e-13 | 1 |
nerve connecting eye with brain | 8.64e-13 | 1 |
nerve | 8.64e-13 | 1 |
retinal neural layer | 8.64e-13 | 1 |
presumptive neural retina | 8.64e-13 | 1 |
intralobular bile duct | 1.09e-12 | 1 |
acinus | 1.09e-12 | 1 |
intrahepatic bile duct | 1.09e-12 | 1 |
portal lobule | 1.09e-12 | 1 |
hepatic acinus | 1.09e-12 | 1 |
chest | 4.29e-10 | 11 |
muscle structure | 4.17e-07 | 2 |
muscle organ | 4.17e-07 | 2 |
neural tissue | 4.98e-07 | 2 |
multi cell component structure | 4.98e-07 | 2 |
neuron projection bundle | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 2.06e-13 | 1 |
liver cancer | 7.68e-13 | 1 |
mesenchymal cell neoplasm | 4.69e-07 | 2 |