FFCP PHASE1:Hg19::chr4:187604556..187604566,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:187604556..187604566,- | |||
|coexpression_cluster_id=C100 | |coexpression_cluster_id=C100 | ||
|description=CAGE_peak_at_chr4:187604556..187604566,- | |description=CAGE_peak_at_chr4:187604556..187604566,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000322!2.07e-12!3;CL:0002178!2.89e-12!3;CL:0002166!3.24e-12!3 | |ontology_enrichment_celltype=CL:0000322!2.07e-12!3;CL:0002178!2.89e-12!3;CL:0002166!3.24e-12!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;3.66e-23;3!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9 | |ontology_enrichment_celltype_v019=CL:0000322;3.66e-23;3!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,3.27e-23,3;CL:0002202,1.12e-08,9;CL:0002632,1.12e-08,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:6193!3.61e-34!1;DOID:3910!6.48e-18!2;DOID:3350!7.67e-18!2;DOID:3493!1.07e-17!2;DOID:3119!2.08e-10!14;DOID:3908!5.73e-08!5 | |ontology_enrichment_disease=DOID:6193!3.61e-34!1;DOID:3910!6.48e-18!2;DOID:3350!7.67e-18!2;DOID:3493!1.07e-17!2;DOID:3119!2.08e-10!14;DOID:3908!5.73e-08!5 | ||
|ontology_enrichment_disease_v019=DOID:6193;3.34e-66;1!DOID:3350;5.96e-34;2!DOID:3910;5.96e-34;2!DOID:3908;1.71e-14;5!DOID:1325;9.43e-11;7!DOID:3904;9.43e-11;7!DOID:3905;1.16e-08;9 | |ontology_enrichment_disease_v019=DOID:6193;3.34e-66;1!DOID:3350;5.96e-34;2!DOID:3910;5.96e-34;2!DOID:3908;1.71e-14;5!DOID:1325;9.43e-11;7!DOID:3904;9.43e-11;7!DOID:3905;1.16e-08;9 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,4.66e-66,1;DOID:3910,5.04e-34,2;DOID:3350,7.05e-34,2;DOID:3908,1.60e-14,5;DOID:1325,8.99e-11,7;DOID:3904,8.99e-11,7;DOID:3905,1.12e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0004903!6.48e-18!2;UBERON:0002173!6.48e-18!2;UBERON:0002186!6.48e-18!2;UBERON:0000945!2.01e-17!8;UBERON:0010039!2.01e-17!8;UBERON:0004821!2.07e-12!3;UBERON:0003215!2.07e-12!3;UBERON:0002299!2.07e-12!3;UBERON:0006524!2.07e-12!3;UBERON:0008874!2.07e-12!3;UBERON:0002169!2.07e-12!3;UBERON:0004894!2.07e-12!3;UBERON:0001708!1.70e-09!4;UBERON:0001704!1.70e-09!4;UBERON:0002090!9.49e-07!6 | |ontology_enrichment_uberon=UBERON:0004903!6.48e-18!2;UBERON:0002173!6.48e-18!2;UBERON:0002186!6.48e-18!2;UBERON:0000945!2.01e-17!8;UBERON:0010039!2.01e-17!8;UBERON:0004821!2.07e-12!3;UBERON:0003215!2.07e-12!3;UBERON:0002299!2.07e-12!3;UBERON:0006524!2.07e-12!3;UBERON:0008874!2.07e-12!3;UBERON:0002169!2.07e-12!3;UBERON:0004894!2.07e-12!3;UBERON:0001708!1.70e-09!4;UBERON:0001704!1.70e-09!4;UBERON:0002090!9.49e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;5.96e-34;2!UBERON:0002173;5.96e-34;2!UBERON:0002186;5.96e-34;2!UBERON:0004821;3.66e-23;3!UBERON:0007499;3.66e-23;3!UBERON:0003215;3.66e-23;3!UBERON:0010368;3.66e-23;3!UBERON:0009911;3.66e-23;3!UBERON:0002299;3.66e-23;3!UBERON:0006524;3.66e-23;3!UBERON:0008874;3.66e-23;3!UBERON:0002169;3.66e-23;3!UBERON:0004894;3.66e-23;3!UBERON:0009856;9.45e-18;4!UBERON:0000058;6.34e-08;10 | |ontology_enrichment_uberon_v019=UBERON:0004903;5.96e-34;2!UBERON:0002173;5.96e-34;2!UBERON:0002186;5.96e-34;2!UBERON:0004821;3.66e-23;3!UBERON:0007499;3.66e-23;3!UBERON:0003215;3.66e-23;3!UBERON:0010368;3.66e-23;3!UBERON:0009911;3.66e-23;3!UBERON:0002299;3.66e-23;3!UBERON:0006524;3.66e-23;3!UBERON:0008874;3.66e-23;3!UBERON:0002169;3.66e-23;3!UBERON:0004894;3.66e-23;3!UBERON:0009856;9.45e-18;4!UBERON:0000058;6.34e-08;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,5.04e-34,2;UBERON:0002173,5.04e-34,2;UBERON:0002186,5.04e-34,2;UBERON:0004821,3.27e-23,3;UBERON:0003215,3.27e-23,3;UBERON:0010368,3.27e-23,3;UBERON:0009911,3.27e-23,3;UBERON:0002299,3.27e-23,3;UBERON:0006524,3.27e-23,3;UBERON:0008874,3.27e-23,3;UBERON:0002169,3.27e-23,3;UBERON:0004894,3.27e-23,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37588825977293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44106993273063,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37588825977293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44106993273063,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:187604556..187604566,- | |short_description=p@chr4:187604556..187604566,- | ||
}} | }} |
Latest revision as of 04:10, 30 July 2015
Short description: | p@chr4:187604556..187604566, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:187604556..187604566, - |
Coexpression cluster: | C100_rhabdomyosarcoma_gastric_pineal_Wilms_cervical_mesodermal_endometrial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 3.27e-23 | 3 |
epithelial cell of tracheobronchial tree | 1.12e-08 | 9 |
epithelial cell of lower respiratory tract | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 5.04e-34 | 2 |
alveolar duct | 5.04e-34 | 2 |
bronchiole | 5.04e-34 | 2 |
pulmonary alveolus epithelium | 3.27e-23 | 3 |
alveolus | 3.27e-23 | 3 |
pulmonary lobule | 3.27e-23 | 3 |
lobule | 3.27e-23 | 3 |
alveolus of lung | 3.27e-23 | 3 |
alveolar system | 3.27e-23 | 3 |
pulmonary acinus | 3.27e-23 | 3 |
alveolar sac | 3.27e-23 | 3 |
alveolar wall | 3.27e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 4.66e-66 | 1 |
lung adenocarcinoma | 5.04e-34 | 2 |
mesenchymal cell neoplasm | 7.05e-34 | 2 |
non-small cell lung carcinoma | 1.60e-14 | 5 |
bronchus cancer | 8.99e-11 | 7 |
bronchogenic carcinoma | 8.99e-11 | 7 |
lung carcinoma | 1.12e-08 | 9 |