FFCP PHASE1:Hg19::chr3:98685947..98685961,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98685947..98685961,+ | |||
|description=CAGE_peak_at_chr3:98685947..98685961,+ | |description=CAGE_peak_at_chr3:98685947..98685961,+ | ||
|id=chr3:98685947..98685961,+ | |id=chr3:98685947..98685961,+ | ||
|ontology_enrichment_celltype=CL:0000243!9.95e-08!15;CL:0000125!9.95e-08!15;CL:0000030!9.95e-08!15;CL:0000339!9.95e-08!15;CL:0000077!5.51e-07!19;CL:0000095!8.37e-07!17;CL:0000123!8.37e-07!17 | |ontology_enrichment_celltype=CL:0000243!9.95e-08!15;CL:0000125!9.95e-08!15;CL:0000030!9.95e-08!15;CL:0000339!9.95e-08!15;CL:0000077!5.51e-07!19;CL:0000095!8.37e-07!17;CL:0000123!8.37e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002262;2.72e-10;2!CL:1000398;2.72e-10;2!CL:0000077;3.52e-09;19!CL:0000322;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,2.99e-10,2;CL:1000398,2.99e-10,2;CL:0000077,3.83e-09,19;CL:0000322,2.63e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006238;1.56e-07;10 | |||
|ontology_enrichment_disease=DOID:1115!2.90e-08!20;DOID:0060072!1.04e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:3910;2.72e-10;2!DOID:3093;5.63e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.49e-10,2;DOID:3093,5.31e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000488!6.87e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.72e-10;2!UBERON:0001281;2.72e-10;2!UBERON:0003497;2.72e-10;2!UBERON:0003909;2.72e-10;2!UBERON:0003835;2.72e-10;2!UBERON:0002173;2.72e-10;2!UBERON:0002186;2.72e-10;2!UBERON:0000058;4.04e-08;10!UBERON:0004821;2.79e-07;3!UBERON:0007499;2.79e-07;3!UBERON:0003215;2.79e-07;3!UBERON:0010368;2.79e-07;3!UBERON:0009911;2.79e-07;3!UBERON:0002299;2.79e-07;3!UBERON:0001280;2.79e-07;3!UBERON:0004647;2.79e-07;3!UBERON:0006524;2.79e-07;3!UBERON:0008874;2.79e-07;3!UBERON:0002169;2.79e-07;3!UBERON:0004894;2.79e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,7.78e-13,6;UBERON:0003928,7.78e-13,6;UBERON:0004903,2.49e-10,2;UBERON:0002173,2.49e-10,2;UBERON:0002186,2.49e-10,2;UBERON:0001281,2.99e-10,2;UBERON:0003497,2.99e-10,2;UBERON:0003909,2.99e-10,2;UBERON:0003835,2.99e-10,2;UBERON:0000058,4.29e-09,19;UBERON:0002294,7.16e-09,9;UBERON:0001173,7.16e-09,9;UBERON:0004912,7.16e-09,9;UBERON:0004821,2.63e-07,3;UBERON:0003215,2.63e-07,3;UBERON:0010368,2.63e-07,3;UBERON:0009911,2.63e-07,3;UBERON:0002299,2.63e-07,3;UBERON:0006524,2.63e-07,3;UBERON:0008874,2.63e-07,3;UBERON:0002169,2.63e-07,3;UBERON:0004894,2.63e-07,3;UBERON:0001280,2.97e-07,3;UBERON:0004647,2.97e-07,3;UBERON:0005171,2.97e-07,3;UBERON:0007499,4.79e-07,25;UBERON:0009856,8.54e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57504788195691,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0.355009592516614,0.302256294682921,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.439001141634502,0,0.100528972411631,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,2.61460037580088,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0.405820753925408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07842021376792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.993573058514948,0,0,0,0,0,0,0,0,2.88109595976299,0.99402028452346,0,2.44627570932505,1.77824838730966,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0.681552087141687,0,0,0,0,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.38582807654183,0.337884881306145,1.02496607435179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40341013740704,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57504788195691,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0.355009592516614,0.302256294682921,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.439001141634502,0,0.100528972411631,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,2.61460037580088,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0.405820753925408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07842021376792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.993573058514948,0,0,0,0,0,0,0,0,2.88109595976299,0.99402028452346,0,2.44627570932505,1.77824838730966,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0.681552087141687,0,0,0,0,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.38582807654183,0.337884881306145,1.02496607435179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40341013740704,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr3:98685947..98685961,+ | |short_description=p@chr3:98685947..98685961,+ | ||
}} | }} |
Latest revision as of 00:09, 30 July 2015
Short description: | p@chr3:98685947..98685961, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98685947..98685961, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 2.99e-10 | 2 |
endothelial cell of hepatic sinusoid | 2.99e-10 | 2 |
mesothelial cell | 3.83e-09 | 19 |
pneumocyte | 2.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bile duct | 7.78e-13 | 6 |
digestive system duct | 7.78e-13 | 6 |
bronchoalveolar duct junction | 2.49e-10 | 2 |
alveolar duct | 2.49e-10 | 2 |
bronchiole | 2.49e-10 | 2 |
hepatic sinusoid | 2.99e-10 | 2 |
abdomen blood vessel | 2.99e-10 | 2 |
sinusoid | 2.99e-10 | 2 |
abdominal segment blood vessel | 2.99e-10 | 2 |
duct | 4.29e-09 | 19 |
biliary system | 7.16e-09 | 9 |
biliary tree | 7.16e-09 | 9 |
biliary bud | 7.16e-09 | 9 |
pulmonary alveolus epithelium | 2.63e-07 | 3 |
alveolus | 2.63e-07 | 3 |
pulmonary lobule | 2.63e-07 | 3 |
lobule | 2.63e-07 | 3 |
alveolus of lung | 2.63e-07 | 3 |
alveolar system | 2.63e-07 | 3 |
pulmonary acinus | 2.63e-07 | 3 |
alveolar sac | 2.63e-07 | 3 |
alveolar wall | 2.63e-07 | 3 |
liver parenchyma | 2.97e-07 | 3 |
liver lobule | 2.97e-07 | 3 |
hepatic duct | 2.97e-07 | 3 |
epithelial sac | 4.79e-07 | 25 |
sac | 8.54e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.49e-10 | 2 |
nervous system cancer | 5.31e-07 | 11 |