FFCP PHASE1:Hg19::chr3:98530363..98530400,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98530363..98530400,- | |||
|coexpression_cluster_id=C504 | |||
|description=CAGE_peak_at_chr3:98530363..98530400,- | |description=CAGE_peak_at_chr3:98530363..98530400,- | ||
|id=chr3:98530363..98530400,- | |id=chr3:98530363..98530400,- | ||
|ontology_enrichment_celltype=CL:0000055!5.41e-17!180;CL:0002321!3.60e-13!248;CL:0000220!5.52e-13!246;CL:0000680!6.10e-09!57;CL:0000056!6.10e-09!57;CL:0000355!6.10e-09!57;CL:0000393!1.06e-08!60;CL:0000211!1.06e-08!60;CL:0000133!1.46e-08!59;CL:0000221!1.99e-08!71;CL:0000187!9.25e-08!54;CL:0000359!3.86e-07!32 | |ontology_enrichment_celltype=CL:0000055!5.41e-17!180;CL:0002321!3.60e-13!248;CL:0000220!5.52e-13!246;CL:0000680!6.10e-09!57;CL:0000056!6.10e-09!57;CL:0000355!6.10e-09!57;CL:0000393!1.06e-08!60;CL:0000211!1.06e-08!60;CL:0000133!1.46e-08!59;CL:0000221!1.99e-08!71;CL:0000187!9.25e-08!54;CL:0000359!3.86e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:1000306;4.85e-08;4!CL:0002547;4.85e-08;4!CL:0000359;9.03e-08;32!CL:0002582;4.66e-07;3!CL:0000064;6.12e-07;3!CL:0000067;6.12e-07;3!CL:0005012;6.12e-07;3!CL:0002304;6.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.68e-08,32;CL:1000306,5.92e-08,4;CL:0002547,5.92e-08,4;CL:0000064,2.99e-07,3;CL:0000067,2.99e-07,3;CL:0005012,2.99e-07,3;CL:0002304,2.99e-07,3;CL:0002582,4.15e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.15e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.67e-10;14!DOID:0060072;3.11e-09;4!DOID:120;2.87e-08;27!DOID:0060084;8.64e-08;3!DOID:127;8.64e-08;3!DOID:193;1.67e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.20e-10,14;DOID:0060072,3.31e-09,4;DOID:120,2.61e-08,27;DOID:0060084,8.81e-08,3;DOID:127,8.81e-08,3;DOID:193,1.53e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000483!7.48e-11!309;UBERON:0000475!9.11e-11!365;UBERON:0000119!1.38e-10!312;UBERON:0000486!4.99e-10!82;UBERON:0005256!7.09e-10!143;UBERON:0004290!2.47e-09!70;UBERON:0002385!2.74e-08!63;UBERON:0001015!2.74e-08!63;UBERON:0000383!2.74e-08!63;UBERON:0001134!3.36e-08!61;UBERON:0002036!3.36e-08!61;UBERON:0003082!3.36e-08!61;UBERON:0000914!3.40e-08!83;UBERON:0002329!3.40e-08!83;UBERON:0003077!3.40e-08!83;UBERON:0003059!3.40e-08!83;UBERON:0007282!3.40e-08!83;UBERON:0009618!3.40e-08!83;UBERON:0007285!3.40e-08!83;UBERON:0000490!9.61e-08!138;UBERON:0007625!2.51e-07!11;UBERON:0002100!5.39e-07!216;UBERON:0000481!7.20e-07!347;UBERON:0000468!7.85e-07!659;UBERON:0003914!7.95e-07!118 | |ontology_enrichment_uberon=UBERON:0000483!7.48e-11!309;UBERON:0000475!9.11e-11!365;UBERON:0000119!1.38e-10!312;UBERON:0000486!4.99e-10!82;UBERON:0005256!7.09e-10!143;UBERON:0004290!2.47e-09!70;UBERON:0002385!2.74e-08!63;UBERON:0001015!2.74e-08!63;UBERON:0000383!2.74e-08!63;UBERON:0001134!3.36e-08!61;UBERON:0002036!3.36e-08!61;UBERON:0003082!3.36e-08!61;UBERON:0000914!3.40e-08!83;UBERON:0002329!3.40e-08!83;UBERON:0003077!3.40e-08!83;UBERON:0003059!3.40e-08!83;UBERON:0007282!3.40e-08!83;UBERON:0009618!3.40e-08!83;UBERON:0007285!3.40e-08!83;UBERON:0000490!9.61e-08!138;UBERON:0007625!2.51e-07!11;UBERON:0002100!5.39e-07!216;UBERON:0000481!7.20e-07!347;UBERON:0000468!7.85e-07!659;UBERON:0003914!7.95e-07!118 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.03e-11;33!UBERON:0004571;1.03e-11;33!UBERON:0007625;6.67e-11;11!UBERON:0010371;9.82e-09;31!UBERON:0000488;2.05e-08;4!UBERON:0004797;4.85e-08;4!UBERON:0000415;4.85e-08;4!UBERON:0007240;4.85e-08;4!UBERON:0005742;4.85e-08;4!UBERON:0005734;4.85e-08;4!UBERON:0004664;4.85e-08;4!UBERON:0004663;4.85e-08;4!UBERON:0001637;5.96e-08;42!UBERON:0003509;5.96e-08;42!UBERON:0004572;5.96e-08;42!UBERON:0000947;1.88e-07;21!UBERON:0010191;1.88e-07;21!UBERON:0001778;6.12e-07;3!UBERON:0001775;6.12e-07;3!UBERON:0000992;7.47e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.43e-12,33;UBERON:0004571,1.43e-12,33;UBERON:0001637,2.44e-11,42;UBERON:0003509,2.44e-11,42;UBERON:0004572,2.44e-11,42;UBERON:0007625,3.90e-11,11;UBERON:0000488,5.64e-09,4;UBERON:0000415,5.92e-08,4;UBERON:0007240,5.92e-08,4;UBERON:0005742,5.92e-08,4;UBERON:0005734,5.92e-08,4;UBERON:0004664,5.92e-08,4;UBERON:0004663,5.92e-08,4;UBERON:0000947,1.33e-07,21;UBERON:0010191,1.33e-07,21;UBERON:0001778,2.99e-07,3;UBERON:0001775,2.99e-07,3;UBERON:0002049,5.23e-07,78;UBERON:0007798,5.23e-07,78;UBERON:0000992,6.32e-07,13;UBERON:0007500,9.72e-07,59;UBERON:0001981,9.72e-07,59;UBERON:0004537,9.72e-07,59;UBERON:0006965,9.72e-07,59 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.281908808191942,0,0,0.872338524100369,0,0.631719873426831,0,0.491467873003018,0,0,0,0.247532705920093,0,4.70627602516243,2.41077811209591,0.730310090387373,1.95173119516203,0.246242116153576,0.408001382488506,0,0.85870796139317,1.64249310087461,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0.486634870302636,1.79616152611729,2.88248216701333,3.16205228495254,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0.367663080345869,1.62028389576352,0,0,0.225222960966644,0,0,0,0,0,0,0,1.39293562831038,1.32409180813219,3.15520282823695,1.41867352879343,0,0,0.24666754841716,0,0.404132016209064,0.163461903113459,0,0,0,1.24864030732128,0.570471821544449,0.747243402759005,0.352303495931295,0.161872944368132,0,0.204154171254893,0.491337269247072,0.103325781175765,0,0,0,0,0,0.250237039743928,0,0,0,0.300476117813194,0.340296549480063,0.89694817844431,0.213557388818567,0.211931901159562,0.600182192168805,0.206105058476878,0.257640540045629,0,0.675105328965065,0.0974370051611986,0.504867548488229,0.0920498986422993,0,2.13005755509969,0.403008392910561,0.339121184620975,0.773043412653187,1.09098448236334,1.72082757233402,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,1.38134921352481,0.928735856063958,0,0.118306800039844,0,0,0.220587945464788,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,1.88724591328378,2.30475599358114,0,1.70899253099772,0.185176890317059,0,0,5.77325368101093,2.08674728955138,0.234817388471643,0,0,0,0,0,0.246217006087397,0,0,0,1.6798212819886,0.708875486211932,1.07470227243418,1.16253575405585,0,2.95597942737566,1.32072651019839,0.829312462163088,0,0.50496973370552,0.063497894292169,0.763976851116555,0,0,0.411309970813294,0.600686115687835,0,0,0,0.22001485746285,1.16344544182,0,1.690605505112,0,0,0.514414748524284,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0,3.31583314765545,0,2.29937879718731,0,0,0,0.239624855491583,0,0,1.44781306667579,1.43833425785268,0.716243852959582,0,0,0,0,2.7950408664471,0,0,0.502548796003046,1.91381625495949,0,0,0,0.24538298343828,0,0.271265023699736,0.831883446123229,0.535286966391485,0.315404830067869,0.117141414992713,0.601892199455438,0,0,1.32845119707087,0.368738337083406,0.695068915744663,0,0,0,0,0,0,0,0,0.744323423456331,0.153461973288062,0.841980283299221,0.384417447767103,0.511707249066704,0.64341568457443,0,3.08419387605311,2.66342587969691,2.79232330446951,8.82732529612156,1.39452454151951,0.120859449591622,6.41620704970512,1.47329582297434,0.34444334449382,0.910455840033585,0.786746489756545,0.451199612907412,1.69433741629712,0,1.46139224653261,3.16654886678627,0,0,3.02282282542995,0,0.270946437543853,0,0.254876273045038,0.831076008928724,1.11937377361089,0,0,1.28225062558195,0.328014645699706,0.650756789328606,0.103041011647722,0,0.082509499920588,0,0,0,0.773365746336976,0.616194468458578,0,0.137836572484531,0.214840489736547,0.435050081742686,0.681813019328807,0.178064071293475,0.991709492165869,0.576570202095319,1.65896526242959,0.708104465988849,1.39453664789186,2.83331112147576,0.6970372701606,0.616067160352178,0,0,1.11194531462352,1.00187420719394,0.372158369359667,0.949138274156178,0.190630193923825,0,0.855877976067841,1.27281299170375,0,0.539617372749944,0.274537029736055,0.353437207037059,0,1.58510321173008,0.421258456238981,0.48763373908959,2.68084838594413,0,0.136499911407986,0.565621727814851,0,0,1.32687795048244,1.75380354101505,0,0,1.21746226177622,0.6196469961995,0.281695602532241,0.430234056612155,0.0982490410131212,1.07001315444375,0,0.633322905892992,0,0,0,0.288666338176536,0,0,0.0941438007767792,0,0,0,1.60806380144872,0.507447609232169,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0.111443384277478,1.42068073403207,0,0.296964680832639,0,0,0.140669416410513,0.222617410045812,0,0,0.398495976502139,0,0,0.818149460017238,0,0,1.25815691606258,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0.341380344856499,0,0,0,0,0,0,0.120596438625408,0,0,0.591095237907095,0,0,0,0.0769502585037971,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,2.74297483886435,2.12202650606892,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0,1.60515529459758,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0.150323419414493,0.103688191397247,0.664653872707185,0,0,0,0,2.77349346026277,0,0,0,0.34945333648406,0,0,0.0730893170861856,0.0821154570532092,0,0,0.677942222341597,2.46675464364152,1.39100228192093,0.0633107959558787,0.782205530939212,0.64127056201227,0,0.19980960958213,0.14409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| ||
|short_description=p@chr3:98530363..98530400,- | |short_description=p@chr3:98530363..98530400,- | ||
}} | }} |
Latest revision as of 00:07, 30 July 2015
Short description: | p@chr3:98530363..98530400, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98530363..98530400, - |
Coexpression cluster: | C504_leiomyoma_Lens_Ciliary_mesenchymal_Smooth_Mesothelial_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.68e-08 | 32 |
fibroblast of tunica adventitia of artery | 5.92e-08 | 4 |
fibroblast of the aortic adventitia | 5.92e-08 | 4 |
ciliated cell | 2.99e-07 | 3 |
ciliated epithelial cell | 2.99e-07 | 3 |
multi-ciliated epithelial cell | 2.99e-07 | 3 |
non-pigmented ciliary epithelial cell | 2.99e-07 | 3 |
visceral preadipocyte | 4.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 1.43e-12 | 33 |
systemic arterial system | 1.43e-12 | 33 |
artery | 2.44e-11 | 42 |
arterial blood vessel | 2.44e-11 | 42 |
arterial system | 2.44e-11 | 42 |
pigment epithelium of eye | 3.90e-11 | 11 |
atypical epithelium | 5.64e-09 | 4 |
artery wall | 5.92e-08 | 4 |
tunica adventitia of artery | 5.92e-08 | 4 |
adventitia | 5.92e-08 | 4 |
tunica adventitia of blood vessel | 5.92e-08 | 4 |
aorta tunica adventitia | 5.92e-08 | 4 |
aorta wall | 5.92e-08 | 4 |
aorta | 1.33e-07 | 21 |
aortic system | 1.33e-07 | 21 |
ciliary epithelium | 2.99e-07 | 3 |
ciliary body | 2.99e-07 | 3 |
vasculature | 5.23e-07 | 78 |
vascular system | 5.23e-07 | 78 |
female gonad | 6.32e-07 | 13 |
epithelial tube open at both ends | 9.72e-07 | 59 |
blood vessel | 9.72e-07 | 59 |
blood vasculature | 9.72e-07 | 59 |
vascular cord | 9.72e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.20e-10 | 14 |
benign neoplasm | 3.31e-09 | 4 |
female reproductive organ cancer | 2.61e-08 | 27 |
cell type benign neoplasm | 8.81e-08 | 3 |
leiomyoma | 8.81e-08 | 3 |
reproductive organ cancer | 1.53e-07 | 29 |