FFCP PHASE1:Hg19::chr3:75719617..75719625,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:75719617..75719625,+ | |||
|description=CAGE_peak_at_chr3:75719617..75719625,+ | |description=CAGE_peak_at_chr3:75719617..75719625,+ | ||
|id=chr3:75719617..75719625,+ | |id=chr3:75719617..75719625,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.81e-10!7;CL:0000586!1.81e-10!7 | |ontology_enrichment_celltype=CL:0000039!1.81e-10!7;CL:0000586!1.81e-10!7 | ||
|ontology_enrichment_celltype_v019=CL:0000333;4.75e-10;5!CL:0000039;2.73e-07;7!CL:0000586;2.73e-07;7!CL:0002253;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.86e-07,7;CL:0000586,2.86e-07,7;CL:0002253,7.61e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.12e-11!235;DOID:14566!3.88e-11!239;DOID:3095!7.71e-11!22;DOID:2994!7.71e-11!22;DOID:0050687!3.17e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:169;1.61e-08;6!DOID:3095;2.05e-08;22!DOID:2994;2.05e-08;22!DOID:1909;8.76e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.03e-09,143;DOID:169,1.61e-08,6;DOID:162,1.76e-08,235;DOID:3095,2.11e-08,22;DOID:2994,2.11e-08,22;DOID:14566,2.93e-08,239 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0007195;1.11e-12;1!UBERON:0001282;2.60e-12;1!UBERON:0009842;2.60e-12;1!UBERON:0003704;2.60e-12;1!UBERON:0001171;2.60e-12;1!UBERON:0001172;2.60e-12;1!UBERON:0000013;4.75e-10;5!UBERON:0002410;4.75e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,1.25e-12,1;UBERON:0001282,4.31e-12,1;UBERON:0009842,4.31e-12,1;UBERON:0003704,4.31e-12,1;UBERON:0001171,4.31e-12,1;UBERON:0001172,4.31e-12,1;UBERON:0000013,4.76e-10,5;UBERON:0002410,4.76e-10,5 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.13929437434833,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,4.23484860254418,0,0,0,0,0,0,0.111308705022906,0.329607748453519,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,2.22273980289274,0,0.185536196323703,0,0.7812832832557,0,0,0,0.762760950878299,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0,0,1.02547850262301,0.46112780877612,0.807818799687949,0,0,0,0,0,0,0,0.676786981851542,0.980312671588698,0.671286347903371,0.189753732724185,0,0.843992258112108,0,0,1.73110911793673,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,1.78154502040776,0.397429223405979,0,0,0.480952921509202,0,0,0,0,0,0,0,0,0.543616824294456,0.104602846312333,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0.76205998859206,0.795229689809303,0.136203406111576,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,1.01980882368113,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0,1.62474530350739,1.06154382279153,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0.389720617678777,0,0.163565394255844,0.655219697692825,0,0,0,0,0.688859918643263,0,0,0,0,3.83683113910955,0.215649622793364,0,2.40261204022431,0,0,0,0,0,0,0,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81534561833168,0,0.785720083444267,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0.588901401691458,0,0,0,0,0,0.233939463462106,0,0,0,1.53916723443601,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,4.79717548439659,0,1.76447435857846,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0.218531143927391,0.633492505057185,0.305966489225945,1.06886962106224,2.48116228744081,0.250707539292375,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.13929437434833,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,4.23484860254418,0,0,0,0,0,0,0.111308705022906,0.329607748453519,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,2.22273980289274,0,0.185536196323703,0,0.7812832832557,0,0,0,0.762760950878299,0.472775363535873,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0,0,1.02547850262301,0.46112780877612,0.807818799687949,0,0,0,0,0,0,0,0.676786981851542,0.980312671588698,0.671286347903371,0.189753732724185,0,0.843992258112108,0,0,1.73110911793673,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,1.78154502040776,0.397429223405979,0,0,0.480952921509202,0,0,0,0,0,0,0,0,0.543616824294456,0.104602846312333,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0.76205998859206,0.795229689809303,0.136203406111576,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,1.01980882368113,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0,1.62474530350739,1.06154382279153,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0.389720617678777,0,0.163565394255844,0.655219697692825,0,0,0,0,0.688859918643263,0,0,0,0,3.83683113910955,0.215649622793364,0,2.40261204022431,0,0,0,0,0,0,0,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81534561833168,0,0.785720083444267,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0.588901401691458,0,0,0,0,0,0.233939463462106,0,0,0,1.53916723443601,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,4.79717548439659,0,1.76447435857846,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0.218531143927391,0.633492505057185,0.305966489225945,1.06886962106224,2.48116228744081,0.250707539292375,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:75719617..75719625,+ | |short_description=p@chr3:75719617..75719625,+ | ||
}} | }} |
Latest revision as of 23:37, 29 July 2015
Short description: | p@chr3:75719617..75719625, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:75719617..75719625, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.86e-07 | 7 |
germ cell | 2.86e-07 | 7 |
epithelial cell of large intestine | 7.61e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 1.25e-12 | 1 |
intralobular bile duct | 4.31e-12 | 1 |
acinus | 4.31e-12 | 1 |
intrahepatic bile duct | 4.31e-12 | 1 |
portal lobule | 4.31e-12 | 1 |
hepatic acinus | 4.31e-12 | 1 |
sympathetic nervous system | 4.76e-10 | 5 |
autonomic nervous system | 4.76e-10 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.03e-09 | 143 |
neuroendocrine tumor | 1.61e-08 | 6 |
cancer | 1.76e-08 | 235 |
germ cell and embryonal cancer | 2.11e-08 | 22 |
germ cell cancer | 2.11e-08 | 22 |
disease of cellular proliferation | 2.93e-08 | 239 |