FFCP PHASE1:Hg19::chr3:57047948..57047954,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:57047948..57047954,+
|short_description=p@chr3:57047948..57047954,+
|description=CAGE_peak_at_chr3:57047948..57047954,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:57047948..57047954,+ | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_at_chr3:57047948..57047954,+ | |||
|id=chr3:57047948..57047954,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;7.13e-20;6!CL:0002255;7.13e-20;6!CL:0000322;7.42e-11;3!CL:0000082;6.19e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,7.13e-20,6;CL:0002255,7.13e-20,6;CL:0000322,7.42e-11,3;CL:0000082,6.01e-07,19;CL:0002076,8.70e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.66e-26;10 | |||
|ontology_enrichment_disease=DOID:1036!1.69e-07!8;DOID:14566!9.97e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:3908;1.44e-23;5!DOID:3001;7.13e-20;6!DOID:3910;1.33e-15;2!DOID:3905;1.40e-13;9!DOID:0060084;1.09e-10;3!DOID:4556;1.09e-10;3!DOID:127;1.09e-10;3!DOID:1324;1.53e-08;15!DOID:0060072;2.43e-08;4!DOID:0050615;4.58e-08;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,1.28e-23,5;DOID:3001,7.13e-20,6;DOID:3910,1.33e-15,2;DOID:3905,1.31e-13,9;DOID:4556,9.90e-11,3;DOID:0060084,1.20e-10,3;DOID:127,1.20e-10,3;DOID:1324,1.47e-08,15;DOID:0060072,2.61e-08,4;DOID:0050615,4.42e-08,16 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000995;1.12e-15;17!UBERON:0004903;1.33e-15;2!UBERON:0002173;1.33e-15;2!UBERON:0002186;1.33e-15;2!UBERON:0003975;7.52e-15;18!UBERON:0004175;7.73e-13;21!UBERON:0004821;7.42e-11;3!UBERON:0007499;7.42e-11;3!UBERON:0003215;7.42e-11;3!UBERON:0010368;7.42e-11;3!UBERON:0009911;7.42e-11;3!UBERON:0002299;7.42e-11;3!UBERON:0006524;7.42e-11;3!UBERON:0008874;7.42e-11;3!UBERON:0002169;7.42e-11;3!UBERON:0004894;7.42e-11;3!UBERON:0003134;9.48e-09;33!UBERON:0009856;1.82e-08;4!UBERON:0000474;3.97e-07;37!UBERON:0004802;6.19e-07;19!UBERON:0000115;6.19e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.33e-15,2;UBERON:0002173,1.33e-15,2;UBERON:0002186,1.33e-15,2;UBERON:0000995,8.05e-13,21;UBERON:0005795,2.85e-12,22;UBERON:0003975,2.85e-12,22;UBERON:0004175,6.93e-11,25;UBERON:0004821,7.42e-11,3;UBERON:0003215,7.42e-11,3;UBERON:0010368,7.42e-11,3;UBERON:0009911,7.42e-11,3;UBERON:0002299,7.42e-11,3;UBERON:0006524,7.42e-11,3;UBERON:0008874,7.42e-11,3;UBERON:0002169,7.42e-11,3;UBERON:0004894,7.42e-11,3;UBERON:0003134,1.43e-07,37;UBERON:0000474,1.43e-07,37;UBERON:0004802,6.01e-07,19;UBERON:0000115,6.01e-07,19;UBERON:0003100,6.81e-07,41 | |||
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| ||
|short_description=p@chr3:57047948..57047954,+ | |||
}} | }} |
Latest revision as of 22:47, 29 July 2015
Short description: | p@chr3:57047948..57047954, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:57047948..57047954, + |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 7.13e-20 | 6 |
stromal cell of endometrium | 7.13e-20 | 6 |
pneumocyte | 7.42e-11 | 3 |
epithelial cell of lung | 6.01e-07 | 19 |
endo-epithelial cell | 8.70e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.33e-15 | 2 |
alveolar duct | 1.33e-15 | 2 |
bronchiole | 1.33e-15 | 2 |
uterus | 8.05e-13 | 21 |
embryonic uterus | 2.85e-12 | 22 |
internal female genitalia | 2.85e-12 | 22 |
internal genitalia | 6.93e-11 | 25 |
pulmonary alveolus epithelium | 7.42e-11 | 3 |
alveolus | 7.42e-11 | 3 |
pulmonary lobule | 7.42e-11 | 3 |
lobule | 7.42e-11 | 3 |
alveolus of lung | 7.42e-11 | 3 |
alveolar system | 7.42e-11 | 3 |
pulmonary acinus | 7.42e-11 | 3 |
alveolar sac | 7.42e-11 | 3 |
alveolar wall | 7.42e-11 | 3 |
female reproductive organ | 1.43e-07 | 37 |
female reproductive system | 1.43e-07 | 37 |
respiratory tract epithelium | 6.01e-07 | 19 |
lung epithelium | 6.01e-07 | 19 |
female organism | 6.81e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 1.28e-23 | 5 |
female reproductive endometrioid cancer | 7.13e-20 | 6 |
lung adenocarcinoma | 1.33e-15 | 2 |
lung carcinoma | 1.31e-13 | 9 |
lung large cell carcinoma | 9.90e-11 | 3 |
cell type benign neoplasm | 1.20e-10 | 3 |
leiomyoma | 1.20e-10 | 3 |
lung cancer | 1.47e-08 | 15 |
benign neoplasm | 2.61e-08 | 4 |
respiratory system cancer | 4.42e-08 | 16 |