FFCP PHASE1:Hg19::chr3:46150615..46150632,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:46150615..46150632,+ | |||
|coexpression_cluster_id=C344 | |coexpression_cluster_id=C344 | ||
|description=CAGE_peak_at_chr3:46150615..46150632,+ | |description=CAGE_peak_at_chr3:46150615..46150632,+ | ||
|id=chr3:46150615..46150632,+ | |id=chr3:46150615..46150632,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.17e-95!42;CL:0000860!1.26e-88!45;CL:0000766!3.22e-74!76;CL:0002194!8.10e-63!63;CL:0000576!8.10e-63!63;CL:0000040!8.10e-63!63;CL:0000559!8.10e-63!63;CL:0002009!1.30e-60!65;CL:0000839!1.21e-55!70;CL:0000557!9.85e-55!71;CL:0000738!1.11e-51!140;CL:0000763!5.33e-47!112;CL:0000049!5.33e-47!112;CL:0002087!1.46e-42!119;CL:0000037!7.41e-40!172;CL:0000566!7.41e-40!172;CL:0000988!5.22e-37!182;CL:0002032!1.17e-36!165;CL:0000837!1.17e-36!165;CL:0002031!1.78e-36!124;CL:0000094!1.24e-19!8;CL:0000081!5.58e-14!11;CL:0000134!7.07e-13!358;CL:0002320!2.12e-12!365;CL:0002393!1.83e-11!9;CL:0002397!1.83e-11!9;CL:0000219!1.02e-10!390;CL:0000767!1.06e-09!3;CL:0000048!1.01e-08!430;CL:0000723!1.94e-08!436;CL:0000771!2.73e-08!2;CL:0000034!4.49e-08!444 | |ontology_enrichment_celltype=CL:0002057!1.17e-95!42;CL:0000860!1.26e-88!45;CL:0000766!3.22e-74!76;CL:0002194!8.10e-63!63;CL:0000576!8.10e-63!63;CL:0000040!8.10e-63!63;CL:0000559!8.10e-63!63;CL:0002009!1.30e-60!65;CL:0000839!1.21e-55!70;CL:0000557!9.85e-55!71;CL:0000738!1.11e-51!140;CL:0000763!5.33e-47!112;CL:0000049!5.33e-47!112;CL:0002087!1.46e-42!119;CL:0000037!7.41e-40!172;CL:0000566!7.41e-40!172;CL:0000988!5.22e-37!182;CL:0002032!1.17e-36!165;CL:0000837!1.17e-36!165;CL:0002031!1.78e-36!124;CL:0000094!1.24e-19!8;CL:0000081!5.58e-14!11;CL:0000134!7.07e-13!358;CL:0002320!2.12e-12!365;CL:0002393!1.83e-11!9;CL:0002397!1.83e-11!9;CL:0000219!1.02e-10!390;CL:0000767!1.06e-09!3;CL:0000048!1.01e-08!430;CL:0000723!1.94e-08!436;CL:0000771!2.73e-08!2;CL:0000034!4.49e-08!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.20e-80;33!CL:0002057;1.20e-80;33!CL:0000473;2.40e-56;39!CL:0000234;2.40e-56;39!CL:0000576;4.47e-40;48!CL:0000766;1.36e-25;69!CL:0000763;1.93e-13;100!CL:0000771;3.44e-12;2!CL:0000094;3.92e-11;8!CL:0002087;4.08e-11;104!CL:0000738;2.65e-08;136!CL:0000081;4.14e-08;11!CL:0000775;4.31e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.25e-76,42;CL:0002057,7.25e-76,42;CL:0000473,1.09e-65,48;CL:0000234,1.09e-65,48;CL:0000766,6.04e-57,72;CL:0002194,1.97e-51,59;CL:0000576,1.97e-51,59;CL:0000040,1.97e-51,59;CL:0000559,1.97e-51,59;CL:0002009,1.36e-49,61;CL:0000839,1.79e-45,66;CL:0000557,1.01e-44,67;CL:0000763,4.38e-36,108;CL:0000049,4.38e-36,108;CL:0000738,1.98e-27,136;CL:0002087,6.94e-24,115;CL:0002031,1.15e-22,120;CL:0002032,3.16e-22,161;CL:0000837,3.16e-22,161;CL:0000037,4.80e-21,168;CL:0000988,1.16e-19,177;CL:0000771,3.35e-12,2;CL:0000094,3.36e-11,8;CL:0000775,3.55e-08,3;CL:0000081,3.71e-08,11;CL:0000134,9.81e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-55;42!CL:0000049;5.00e-10;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.63e-64!102;UBERON:0003061!1.63e-64!102;UBERON:0002193!9.29e-58!112;UBERON:0002371!1.50e-47!80;UBERON:0001474!1.38e-43!86;UBERON:0004765!9.98e-36!101;UBERON:0001434!9.98e-36!101;UBERON:0002405!3.12e-30!115;UBERON:0000178!3.84e-25!15;UBERON:0000179!3.84e-25!15;UBERON:0000463!3.84e-25!15;UBERON:0003081!2.02e-24!216;UBERON:0002204!6.73e-18!167;UBERON:0002384!9.50e-12!375 | |ontology_enrichment_uberon=UBERON:0002390!1.63e-64!102;UBERON:0003061!1.63e-64!102;UBERON:0002193!9.29e-58!112;UBERON:0002371!1.50e-47!80;UBERON:0001474!1.38e-43!86;UBERON:0004765!9.98e-36!101;UBERON:0001434!9.98e-36!101;UBERON:0002405!3.12e-30!115;UBERON:0000178!3.84e-25!15;UBERON:0000179!3.84e-25!15;UBERON:0000463!3.84e-25!15;UBERON:0003081!2.02e-24!216;UBERON:0002204!6.73e-18!167;UBERON:0002384!9.50e-12!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.18e-27;15!UBERON:0000179;1.18e-27;15!UBERON:0000463;1.18e-27;15!UBERON:0002390;3.64e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.21e-57,98;UBERON:0003061,4.21e-57,98;UBERON:0002193,2.97e-51,108;UBERON:0002371,7.75e-39,76;UBERON:0001474,1.27e-35,82;UBERON:0004765,5.38e-32,90;UBERON:0002405,8.54e-31,93;UBERON:0001434,2.86e-28,100;UBERON:0000178,1.24e-27,15;UBERON:0000179,1.24e-27,15;UBERON:0000463,1.24e-27,15;UBERON:0003081,3.08e-24,203;UBERON:0002204,9.40e-15,167;UBERON:0000926,3.38e-13,315;UBERON:0004120,3.38e-13,315;UBERON:0006603,3.38e-13,315 | |||
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| ||
|short_description=p@chr3:46150615..46150632,+ | |short_description=p@chr3:46150615..46150632,+ | ||
}} | }} |
Latest revision as of 21:20, 29 July 2015
Short description: | p@chr3:46150615..46150632, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:46150615..46150632, + |
Coexpression cluster: | C344_Neutrophils_CD14_Eosinophils_Whole_blood_CD14CD16_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.25e-76 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.25e-76 | 42 |
defensive cell | 1.09e-65 | 48 |
phagocyte | 1.09e-65 | 48 |
myeloid leukocyte | 6.04e-57 | 72 |
monopoietic cell | 1.97e-51 | 59 |
monocyte | 1.97e-51 | 59 |
monoblast | 1.97e-51 | 59 |
promonocyte | 1.97e-51 | 59 |
macrophage dendritic cell progenitor | 1.36e-49 | 61 |
myeloid lineage restricted progenitor cell | 1.79e-45 | 66 |
granulocyte monocyte progenitor cell | 1.01e-44 | 67 |
myeloid cell | 4.38e-36 | 108 |
common myeloid progenitor | 4.38e-36 | 108 |
leukocyte | 1.98e-27 | 136 |
nongranular leukocyte | 6.94e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 1.15e-22 | 120 |
hematopoietic oligopotent progenitor cell | 3.16e-22 | 161 |
hematopoietic multipotent progenitor cell | 3.16e-22 | 161 |
hematopoietic stem cell | 4.80e-21 | 168 |
hematopoietic cell | 1.16e-19 | 177 |
eosinophil | 3.35e-12 | 2 |
granulocyte | 3.36e-11 | 8 |
neutrophil | 3.55e-08 | 3 |
blood cell | 3.71e-08 | 11 |
mesenchymal cell | 9.81e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.21e-57 | 98 |
blood island | 4.21e-57 | 98 |
hemolymphoid system | 2.97e-51 | 108 |
bone marrow | 7.75e-39 | 76 |
bone element | 1.27e-35 | 82 |
skeletal element | 5.38e-32 | 90 |
immune system | 8.54e-31 | 93 |
skeletal system | 2.86e-28 | 100 |
blood | 1.24e-27 | 15 |
haemolymphatic fluid | 1.24e-27 | 15 |
organism substance | 1.24e-27 | 15 |
lateral plate mesoderm | 3.08e-24 | 203 |
musculoskeletal system | 9.40e-15 | 167 |
mesoderm | 3.38e-13 | 315 |
mesoderm-derived structure | 3.38e-13 | 315 |
presumptive mesoderm | 3.38e-13 | 315 |