FFCP PHASE1:Hg19::chr3:176634728..176634764,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:176634728..176634764,- | |||
|coexpression_cluster_id=C267 | |coexpression_cluster_id=C267 | ||
|description=CAGE_peak_at_chr3:176634728..176634764,- | |description=CAGE_peak_at_chr3:176634728..176634764,- | ||
|id=chr3:176634728..176634764,- | |id=chr3:176634728..176634764,- | ||
|ontology_enrichment_celltype=CL:0000039!1.92e-15!7;CL:0000586!1.92e-15!7;CL:0002076!6.19e-08!43;CL:0000540!8.09e-07!6;CL:0000031!8.09e-07!6;CL:0000404!8.09e-07!6 | |ontology_enrichment_celltype=CL:0000039!1.92e-15!7;CL:0000586!1.92e-15!7;CL:0002076!6.19e-08!43;CL:0000540!8.09e-07!6;CL:0000031!8.09e-07!6;CL:0000404!8.09e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.05e-37;7!CL:0000586;8.05e-37;7!CL:0000322;8.17e-11;3!CL:0002231;1.04e-10;3!CL:0000083;1.70e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.30e-37,7;CL:0000586,6.30e-37,7;CL:0000322,8.17e-11,3;CL:0002231,1.20e-10,3;CL:0000083,1.70e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!5.35e-07!14 | |ontology_enrichment_disease=DOID:1749!5.35e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1799;7.48e-30;1!DOID:10165;7.48e-30;1!DOID:1798;7.48e-30;1!DOID:3910;1.54e-15;2!DOID:3095;2.74e-12;22!DOID:2994;2.74e-12;22!DOID:1793;1.70e-08;4!DOID:3908;5.38e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,7.48e-30,1;DOID:10165,7.48e-30,1;DOID:1798,7.48e-30,1;DOID:3910,1.54e-15,2;DOID:3095,2.54e-12,22;DOID:2994,2.54e-12,22;DOID:1793,1.70e-08,4;DOID:3908,5.38e-07,5 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.54e-15;2!UBERON:0002173;1.54e-15;2!UBERON:0002186;1.54e-15;2!UBERON:0004821;8.17e-11;3!UBERON:0007499;8.17e-11;3!UBERON:0003215;8.17e-11;3!UBERON:0010368;8.17e-11;3!UBERON:0009911;8.17e-11;3!UBERON:0002299;8.17e-11;3!UBERON:0006524;8.17e-11;3!UBERON:0008874;8.17e-11;3!UBERON:0002169;8.17e-11;3!UBERON:0004894;8.17e-11;3!UBERON:0009856;1.96e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.54e-15,2;UBERON:0002173,1.54e-15,2;UBERON:0002186,1.54e-15,2;UBERON:0004821,8.17e-11,3;UBERON:0003215,8.17e-11,3;UBERON:0010368,8.17e-11,3;UBERON:0009911,8.17e-11,3;UBERON:0002299,8.17e-11,3;UBERON:0006524,8.17e-11,3;UBERON:0008874,8.17e-11,3;UBERON:0002169,8.17e-11,3;UBERON:0004894,8.17e-11,3 | |||
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| ||
|short_description=p@chr3:176634728..176634764,- | |short_description=p@chr3:176634728..176634764,- | ||
}} | }} |
Latest revision as of 18:23, 29 July 2015
Short description: | p@chr3:176634728..176634764, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:176634728..176634764, - |
Coexpression cluster: | C267_pancreatic_placenta_choriocarcinoma_testicular_teratocarcinoma_chorionic_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.30e-37 | 7 |
germ cell | 6.30e-37 | 7 |
pneumocyte | 8.17e-11 | 3 |
epithelial cell of prostate | 1.20e-10 | 3 |
epithelial cell of pancreas | 1.70e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.54e-15 | 2 |
alveolar duct | 1.54e-15 | 2 |
bronchiole | 1.54e-15 | 2 |
pulmonary alveolus epithelium | 8.17e-11 | 3 |
alveolus | 8.17e-11 | 3 |
pulmonary lobule | 8.17e-11 | 3 |
lobule | 8.17e-11 | 3 |
alveolus of lung | 8.17e-11 | 3 |
alveolar system | 8.17e-11 | 3 |
pulmonary acinus | 8.17e-11 | 3 |
alveolar sac | 8.17e-11 | 3 |
alveolar wall | 8.17e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 7.48e-30 | 1 |
endocrine pancreas cancer | 7.48e-30 | 1 |
pancreatic endocrine carcinoma | 7.48e-30 | 1 |
lung adenocarcinoma | 1.54e-15 | 2 |
germ cell and embryonal cancer | 2.54e-12 | 22 |
germ cell cancer | 2.54e-12 | 22 |
pancreatic cancer | 1.70e-08 | 4 |
non-small cell lung carcinoma | 5.38e-07 | 5 |