FFCP PHASE1:Hg19::chr3:149254254..149254259,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:149254254..149254259,- | |||
|description=CAGE_peak_at_chr3:149254254..149254259,- | |description=CAGE_peak_at_chr3:149254254..149254259,- | ||
|id=chr3:149254254..149254259,- | |id=chr3:149254254..149254259,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;4.57e-10;3!CL:0002618;9.36e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,6.28e-10,3;CL:0002618,1.52e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.18e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;1.19e-14;2!DOID:1909;1.51e-14;2!DOID:0060085;6.18e-08;1!DOID:3165;6.18e-08;1!DOID:0060121;6.18e-08;1!DOID:2438;6.18e-08;1!DOID:4418;6.18e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.80e-14,2;DOID:3910,1.93e-14,2;DOID:0060085,3.34e-08,1;DOID:3165,3.34e-08,1;DOID:0060121,3.34e-08,1;DOID:2438,3.34e-08,1;DOID:4418,3.34e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.68e-07!115 | |ontology_enrichment_uberon=UBERON:0007023!1.68e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.19e-14;2!UBERON:0002173;1.19e-14;2!UBERON:0002186;1.19e-14;2!UBERON:0004821;4.57e-10;3!UBERON:0007499;4.57e-10;3!UBERON:0003215;4.57e-10;3!UBERON:0010368;4.57e-10;3!UBERON:0009911;4.57e-10;3!UBERON:0002299;4.57e-10;3!UBERON:0006524;4.57e-10;3!UBERON:0008874;4.57e-10;3!UBERON:0002169;4.57e-10;3!UBERON:0004894;4.57e-10;3!UBERON:0002134;2.04e-08;1!UBERON:0005208;2.04e-08;1!UBERON:0004145;2.04e-08;1!UBERON:0005946;2.04e-08;1!UBERON:0005965;2.04e-08;1!UBERON:0002078;2.04e-08;1!UBERON:0000941;6.18e-08;1!UBERON:0001785;6.18e-08;1!UBERON:0002464;6.18e-08;1!UBERON:0004904;6.18e-08;1!UBERON:0001021;6.18e-08;1!UBERON:0009856;9.30e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.93e-14,2;UBERON:0002173,1.93e-14,2;UBERON:0002186,1.93e-14,2;UBERON:0004821,6.28e-10,3;UBERON:0003215,6.28e-10,3;UBERON:0010368,6.28e-10,3;UBERON:0009911,6.28e-10,3;UBERON:0002299,6.28e-10,3;UBERON:0006524,6.28e-10,3;UBERON:0008874,6.28e-10,3;UBERON:0002169,6.28e-10,3;UBERON:0004894,6.28e-10,3;UBERON:0002134,1.91e-08,1;UBERON:0005208,1.91e-08,1;UBERON:0005946,1.91e-08,1;UBERON:0005965,1.91e-08,1;UBERON:0002078,1.91e-08,1;UBERON:0002049,2.86e-08,78;UBERON:0007798,2.86e-08,78;UBERON:0000941,5.79e-08,1;UBERON:0001785,5.79e-08,1;UBERON:0002464,5.79e-08,1;UBERON:0004904,5.79e-08,1;UBERON:0001021,5.79e-08,1;UBERON:0003902,5.79e-08,1;UBERON:0005425,5.79e-08,1 | |||
|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0.286235987131057,0.547497700291537,0.125542639594803,0.229240217243854,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541607727530031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.945348171640679,1.55210578223795,0.702678285545008,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00416183829401,0.402829317109147,0,0.732186172644509,0.367663080345869,0,1.16089646769304,1.12264686313085,0.563057402416611,0,0,0.183201743930407,0,0,0,0.993943903390637,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0.605429710579726,1.15235184896,0,0,0,0,0.704606991862589,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.717558542755448,0,0,0.600182192168805,0.103052529238439,0,0,0.506328996723799,0,0.757301322732344,0.184099797284599,0.161646056818812,0.355009592516614,0,0,0,0,0,0.243947412259191,0,0.464775771478074,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0.590789906681404,0.441463099414651,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0,0,0.462985512576611,2.66355813128438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.646358578788889,0,0,0,2.08014873822732,0,0,0.266422179016099,0.142977993658148,0,0.823240336780769,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0,0.306923946576125,0.841980283299221,0.128139149255701,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.697262270759755,0,0.200506470303285,0,0.574072240823034,0.182091168006717,0,0,0.15403067420883,0,0,0,0,0.340187410553031,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0.457847324091717,0.165018999841176,0,0,0,0.193341436584244,0,0,0,0.429680979473094,0.725083469571143,0,0,0,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,1.28812398067792,1.116475108079,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70599442741899,0,0.409499734223957,0.565621727814851,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.121360521749513,0,1.13654458722565,0,0,0,0,0.562677665642051,0.111308705022906,0,0.844501632511974,1.39473591775749,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.174919999992391,1.44999915086959,0,3.0510438035132,0.236387681767936,0,1.16641845353302,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.384751292518985,0,0.23056390438806,0.448788222048861,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0.476809736941136,0.210998064528027,0,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0.252746318513952,0,0.103688191397247,0,0,0,0,3.41531455235751,0.277349346026277,0,0.293977192243133,0.0870592065804026,0,0.859930162358083,0.0967563312890851,0.146178634172371,0,0.193978032976839,0,0,4.79646736263628,1.78843150532691,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0.509991088181609,0,0,0.136905378891993,0,0,0,0.558564802544508,0,3.58936512288407,0.199679000498991,0,0.223171457441873,0.604651252380536,0.720599767084807,0,0.393915911536118,0.494495150286999,0.404421263125109,0,0.254019996197353,0.795229689809303,0.681017030557878,0,0,0,0,0.77380195455795,0,0,0.157611414598396,0.262272940674991,0,0.896436696664224,0,0.714695326373367,0,0,0.542999601753713,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0.513260513652988,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0.573409195690071,0.554645257684261,0.0620964029413835,0.691743174681154,0,1.21319294033318,2.28372266835974,0,0,0,0.298509605773748,0.233713309847224,0,0.947015026375446,0,0,0,0.151230923763239,0.15543720058278,0.591420599958536,0.477890301491107,0,0,0,1.59505028734797,0,0,0,0.813741466409323,0,0.322231671127465,0.464033759878494,0,0,0.686791410365586,0,0,0,0,0,0,0,0,0,0.617602894321944,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.983091635014877,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413373593002368,0,0,0,0.496211178389294,0,0.127762427639595,0.535701835878287,0.672567444437648,0,0,0.177404740325278,0,0,0.0679697329768317,0,0.118193840883968,5.00541308514311,0.313972371402056,0,0,0,0.431855182437243,0,0.285906176706625,0,0,0,0,0.62164849248911,0,0,0,0.354996002191696,0.0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|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0.286235987131057,0.547497700291537,0.125542639594803,0.229240217243854,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541607727530031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.945348171640679,1.55210578223795,0.702678285545008,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00416183829401,0.402829317109147,0,0.732186172644509,0.367663080345869,0,1.16089646769304,1.12264686313085,0.563057402416611,0,0,0.183201743930407,0,0,0,0.993943903390637,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0.605429710579726,1.15235184896,0,0,0,0,0.704606991862589,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.717558542755448,0,0,0.600182192168805,0.103052529238439,0,0,0.506328996723799,0,0.757301322732344,0.184099797284599,0.161646056818812,0.355009592516614,0,0,0,0,0,0.243947412259191,0,0.464775771478074,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0.590789906681404,0.441463099414651,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,1.44331342025273,0,0,0,0.462985512576611,2.66355813128438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.646358578788889,0,0,0,2.08014873822732,0,0,0.266422179016099,0.142977993658148,0,0.823240336780769,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0,0.306923946576125,0.841980283299221,0.128139149255701,0,0,0,0,0.355123450626254,0.0821271560138091,0,0.697262270759755,0,0.200506470303285,0,0.574072240823034,0.182091168006717,0,0,0.15403067420883,0,0,0,0,0.340187410553031,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0.457847324091717,0.165018999841176,0,0,0,0.193341436584244,0,0,0,0.429680979473094,0.725083469571143,0,0,0,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0,1.28812398067792,1.116475108079,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70599442741899,0,0.409499734223957,0.565621727814851,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0.121360521749513,0,1.13654458722565,0,0,0,0,0.562677665642051,0.111308705022906,0,0.844501632511974,1.39473591775749,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.174919999992391,1.44999915086959,0,3.0510438035132,0.236387681767936,0,1.16641845353302,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.384751292518985,0,0.23056390438806,0.448788222048861,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0.476809736941136,0.210998064528027,0,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0.252746318513952,0,0.103688191397247,0,0,0,0,3.41531455235751,0.277349346026277,0,0.293977192243133,0.0870592065804026,0,0.859930162358083,0.0967563312890851,0.146178634172371,0,0.193978032976839,0,0,4.79646736263628,1.78843150532691,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0.509991088181609,0,0,0.136905378891993,0,0,0,0.558564802544508,0,3.58936512288407,0.199679000498991,0,0.223171457441873,0.604651252380536,0.720599767084807,0,0.393915911536118,0.494495150286999,0.404421263125109,0,0.254019996197353,0.795229689809303,0.681017030557878,0,0,0,0,0.77380195455795,0,0,0.157611414598396,0.262272940674991,0,0.896436696664224,0,0.714695326373367,0,0,0.542999601753713,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0.513260513652988,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0.573409195690071,0.554645257684261,0.0620964029413835,0.691743174681154,0,1.21319294033318,2.28372266835974,0,0,0,0.298509605773748,0.233713309847224,0,0.947015026375446,0,0,0,0.151230923763239,0.15543720058278,0.591420599958536,0.477890301491107,0,0,0,1.59505028734797,0,0,0,0.813741466409323,0,0.322231671127465,0.464033759878494,0,0,0.686791410365586,0,0,0,0,0,0,0,0,0,0.617602894321944,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0.983091635014877,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413373593002368,0,0,0,0.496211178389294,0,0.127762427639595,0.535701835878287,0.672567444437648,0,0,0.177404740325278,0,0,0.0679697329768317,0,0.118193840883968,5.00541308514311,0.313972371402056,0,0,0,0.431855182437243,0,0.285906176706625,0,0,0,0,0.62164849248911,0,0,0,0.354996002191696,0.0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| ||
|short_description=p@chr3:149254254..149254259,- | |short_description=p@chr3:149254254..149254259,- | ||
}} | }} |
Latest revision as of 16:53, 29 July 2015
Short description: | p@chr3:149254254..149254259, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:149254254..149254259, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 6.28e-10 | 3 |
endothelial cell of umbilical vein | 1.52e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.93e-14 | 2 |
alveolar duct | 1.93e-14 | 2 |
bronchiole | 1.93e-14 | 2 |
pulmonary alveolus epithelium | 6.28e-10 | 3 |
alveolus | 6.28e-10 | 3 |
pulmonary lobule | 6.28e-10 | 3 |
lobule | 6.28e-10 | 3 |
alveolus of lung | 6.28e-10 | 3 |
alveolar system | 6.28e-10 | 3 |
pulmonary acinus | 6.28e-10 | 3 |
alveolar sac | 6.28e-10 | 3 |
alveolar wall | 6.28e-10 | 3 |
tricuspid valve | 1.91e-08 | 1 |
right atrium valve | 1.91e-08 | 1 |
outflow tract of atrium | 1.91e-08 | 1 |
outflow part of right atrium | 1.91e-08 | 1 |
right cardiac atrium | 1.91e-08 | 1 |
vasculature | 2.86e-08 | 78 |
vascular system | 2.86e-08 | 78 |
cranial nerve II | 5.79e-08 | 1 |
cranial nerve | 5.79e-08 | 1 |
nerve trunk | 5.79e-08 | 1 |
nerve connecting eye with brain | 5.79e-08 | 1 |
nerve | 5.79e-08 | 1 |
retinal neural layer | 5.79e-08 | 1 |
presumptive neural retina | 5.79e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.80e-14 | 2 |
lung adenocarcinoma | 1.93e-14 | 2 |
organ system benign neoplasm | 3.34e-08 | 1 |
skin benign neoplasm | 3.34e-08 | 1 |
integumentary system benign neoplasm | 3.34e-08 | 1 |
dermis tumor | 3.34e-08 | 1 |
cutaneous fibrous histiocytoma | 3.34e-08 | 1 |