FFCP PHASE1:Hg19::chr3:147124697..147124729,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:147124697..147124729,+ | |||
|coexpression_cluster_id=C1375 | |coexpression_cluster_id=C1375 | ||
|description=CAGE_peak_at_chr3:147124697..147124729,+ | |description=CAGE_peak_at_chr3:147124697..147124729,+ | ||
Latest revision as of 16:44, 29 July 2015
| Short description: | p@chr3:147124697..147124729, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr3:147124697..147124729, + |
| Coexpression cluster: | C1375_cerebellum_Pericytes_extraskeletal_neuroblastoma_teratocarcinoma_neuroectodermal_H9 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr3:147124697..147124729+ |
|---|
0
2
4
6
8
10
12
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system pericyte | 1.01e-23 | 2 |
| fibroblast of choroid plexus | 2.08e-22 | 2 |
| leptomeningeal cell | 5.80e-16 | 3 |
| astrocyte of the cerebellum | 1.32e-15 | 3 |
| pericyte cell | 2.33e-12 | 4 |
| crystallin accumulating cell | 5.40e-12 | 4 |
| vertebrate lens cell | 5.40e-12 | 4 |
| lens epithelial cell | 5.40e-12 | 4 |
| extracellular matrix secreting cell | 3.02e-07 | 15 |
| oligodendrocyte | 3.35e-07 | 7 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| cerebellum | 1.66e-46 | 6 |
| rhombic lip | 1.66e-46 | 6 |
| regional part of metencephalon | 4.78e-31 | 9 |
| metencephalon | 4.78e-31 | 9 |
| future metencephalon | 4.78e-31 | 9 |
| segmental subdivision of hindbrain | 2.67e-23 | 12 |
| hindbrain | 2.67e-23 | 12 |
| presumptive hindbrain | 2.67e-23 | 12 |
| vascular plexus | 2.08e-22 | 2 |
| ventricle of nervous system | 2.08e-22 | 2 |
Showing 1 to 10 of 44 entries
