FFCP PHASE1:Hg19::chr3:147124547..147124563,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport= | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=84107 | |EntrezGene=entrezgene:84107 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=20393 | |HGNC=HGNC:20393 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=C9J7D5 | |UniProt=uniprot:C9J7D5 | ||
|association_with_transcript=13bp_to_ENST00000491672_5end | |association_with_transcript=13bp_to_ENST00000491672_5end | ||
|cluster_id=chr3:147124547..147124563,- | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_6_at_ZIC4_5end | |description=CAGE_peak_6_at_ZIC4_5end | ||
Revision as of 16:44, 29 July 2015
| Short description: | p6@ZIC4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_ZIC4_5end |
| Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
| Association with transcript: | 13bp_to_ENST00000491672_5end |
| EntrezGene: | 84107 |
| HGNC: | 20393 |
| UniProt: | C9J7D5 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@ZIC4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system pericyte | 8.13e-28 | 2 |
| fibroblast of choroid plexus | 9.09e-27 | 2 |
| leptomeningeal cell | 1.62e-18 | 3 |
| pericyte cell | 1.97e-14 | 4 |
| extracellular matrix secreting cell | 1.56e-08 | 15 |
Showing 1 to 5 of 5 entries
| Ontology term | p-value | n |
|---|---|---|
| cerebellum | 3.58e-36 | 6 |
| rhombic lip | 3.58e-36 | 6 |
| segmental subdivision of hindbrain | 8.20e-28 | 12 |
| hindbrain | 8.20e-28 | 12 |
| presumptive hindbrain | 8.20e-28 | 12 |
| vascular plexus | 9.09e-27 | 2 |
| ventricle of nervous system | 9.09e-27 | 2 |
| choroid plexus | 9.09e-27 | 2 |
| brain ventricle | 9.09e-27 | 2 |
| ventricular system of brain | 9.09e-27 | 2 |
Showing 1 to 10 of 27 entries
