FFCP PHASE1:Hg19::chr3:13612049..13612061,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:13612049..13612061,+ | |||
|coexpression_cluster_id=C943 | |||
|description=CAGE_peak_at_chr3:13612049..13612061,+ | |description=CAGE_peak_at_chr3:13612049..13612061,+ | ||
|id=chr3:13612049..13612061,+ | |id=chr3:13612049..13612061,+ | ||
|ontology_enrichment_celltype=CL:0000057!4.10e-16!75;CL:0000136!1.69e-15!15;CL:0002334!2.53e-13!12;CL:0000055!8.30e-12!180;CL:0002620!1.54e-10!23 | |ontology_enrichment_celltype=CL:0000057!4.10e-16!75;CL:0000136!1.69e-15!15;CL:0002334!2.53e-13!12;CL:0000055!8.30e-12!180;CL:0002620!1.54e-10!23 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.12e-20;13!CL:0002615;5.00e-14;3!CL:0002579;2.58e-13;3!CL:0002334;2.62e-12;12!CL:0002617;8.29e-10;2!CL:0002570;3.41e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,5.11e-27,15;CL:0002615,5.13e-14,3;CL:0002579,3.00e-13,3;CL:0002334,2.52e-12,12;CL:0002617,7.79e-10,2;CL:0000057,7.84e-09,76;CL:0000134,2.58e-08,354;CL:0002570,3.55e-08,8;CL:0002320,5.43e-08,361;CL:0000048,2.98e-07,427;CL:0000723,4.98e-07,433;CL:0000219,7.34e-07,386;CL:0000034,9.67e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.11e-07;5!DOID:450;1.11e-07;5!DOID:66;1.11e-07;5!DOID:423;1.11e-07;5!DOID:0080000;1.11e-07;5!DOID:11722;1.11e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.27e-07,5;DOID:450,1.27e-07,5;DOID:66,1.27e-07,5;DOID:423,1.27e-07,5;DOID:0080000,1.27e-07,5;DOID:11722,1.27e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001013!1.09e-09!14;UBERON:0002199!1.42e-09!45;UBERON:0002416!1.42e-09!45;UBERON:0003688!7.41e-09!6;UBERON:0002358!7.41e-09!6;UBERON:0003684!7.41e-09!6;UBERON:0001178!7.41e-09!6;UBERON:0004923!3.57e-07!57 | |ontology_enrichment_uberon=UBERON:0001013!1.09e-09!14;UBERON:0002199!1.42e-09!45;UBERON:0002416!1.42e-09!45;UBERON:0003688!7.41e-09!6;UBERON:0002358!7.41e-09!6;UBERON:0003684!7.41e-09!6;UBERON:0001178!7.41e-09!6;UBERON:0004923!3.57e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.36e-29;9!UBERON:0000042;3.36e-29;9!UBERON:0003688;1.42e-25;6!UBERON:0002358;1.42e-25;6!UBERON:0003684;1.42e-25;6!UBERON:0001178;1.42e-25;6!UBERON:0001013;6.40e-18;14!UBERON:0000310;2.08e-10;10!UBERON:0005406;5.51e-10;2!UBERON:0001443;1.97e-09;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.69e-25,6;UBERON:0002358,1.69e-25,6;UBERON:0003684,1.69e-25,6;UBERON:0001178,1.69e-25,6;UBERON:0004457,1.29e-21,12;UBERON:0000042,1.29e-21,12;UBERON:0001013,7.12e-18,14;UBERON:0000310,1.66e-10,10;UBERON:0005406,5.52e-10,2;UBERON:0001443,1.61e-09,11;UBERON:0002384,1.49e-07,371 | |||
|phase1_expression=3.81524596468169,6.20891519283851,3.80576891059122,10.007329835313,10.7270662662549,6.10636966870258,5.06599756336621,0.631719873426831,2.08948502559871,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.397227542439656,6.02356903572509,0,3.92474320099615,0,0,0,0.269421344139376,0,0.151357427644931,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0.206651562351531,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0.150238058906597,0.113432183160021,1.25572744982203,1.06778694409284,0.635795703478686,2.40072876867522,0.721367704669072,0.772921620136887,0.930584281657949,0.337552664482532,0.389748020644795,2.01947019395292,0.828449087780694,0.646584227275248,2.13005755509969,0.201504196455281,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,1.56449532329816,1.28648187638577,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0.258543431515556,0,0.845302752556,0.26593811658487,0,0,0,0,0,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,0,2.99918973546171,0,0,0,0.718874566474748,1.14861935834114,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.24782516918484,1.24900292158013,0.630809660135739,0.234282829985426,0.300946099727719,0,3.10419213877515,0,0,0,0,0.686286847621712,0,0,0.106727557803444,0,0,0.30239029332968,2.72918588600655,0.460385919864187,4.2099014164961,3.84417447767103,2.04682899626681,2.0911009748669,10.3892646511494,0.308419387605311,0.710246901252508,0.164254312027618,0.519254429183621,0.813472649219715,0,0,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,1.5740617341532,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0,0.571890581771475,0,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0,1.05650146756755,0,0.282810863907425,0,0.551365343546124,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,1.89996871767898,3.62224382255892,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.222886768554957,0,0.47748896947538,0.593929361665277,0.307160702099232,0,0,0,0,0,0.996239941255349,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,1.44999915086959,0,0,0.472775363535873,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0.307801034015188,0,0.46112780877612,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0.85381197895741,2.19790570540343,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859530882839914,0,1.39641200636127,0.229160424011684,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0.7520696820681,0.306345576763462,0.655745261419609,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,1.04478362020812,1.63599316893057,0,0,0.50313580350515,0,2.28840068396924,1.66354016139563,0.777186002913902,0.73927574994817,0,0,0,0.829412415681711,0.53168342911599,0,0.300515217994437,0.380805212168795,0,0,0,1.39210127963548,0,0,2.40376993627955,2.02049693259551,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.68732060563215,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0,0,0,0,1.11598505450025,0.924351257262837,2.59575937274273,0,0,0.380095503034311,0,0.26721740526556,0,0,0.303114792872958,0.535928260312357,0,0,0.426467963801962,0,0,0,0,0,0,0.435433495793923,1.02669990325584,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,1.33151354837103,1.00636896795513,0 | |phase1_expression=3.81524596468169,6.20891519283851,3.80576891059122,10.007329835313,10.7270662662549,6.10636966870258,5.06599756336621,0.631719873426831,2.08948502559871,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.397227542439656,6.02356903572509,0,3.92474320099615,0,0,0,0.269421344139376,0,0.151357427644931,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0.206651562351531,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0.150238058906597,0.113432183160021,1.25572744982203,1.06778694409284,0.635795703478686,2.40072876867522,0.721367704669072,0.772921620136887,0.930584281657949,0.337552664482532,0.389748020644795,2.01947019395292,0.828449087780694,0.646584227275248,2.13005755509969,0.201504196455281,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,1.56449532329816,1.28648187638577,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0.258543431515556,0,0.845302752556,0.26593811658487,0,0,0,0,0,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,0,2.99918973546171,0,0,0,0.718874566474748,1.14861935834114,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.24782516918484,1.24900292158013,0.630809660135739,0.234282829985426,0.300946099727719,0,3.10419213877515,0,0,0,0,0.686286847621712,0,0,0.106727557803444,0,0,0.30239029332968,2.72918588600655,0.460385919864187,4.2099014164961,3.84417447767103,2.04682899626681,2.0911009748669,10.3892646511494,0.308419387605311,0.710246901252508,0.164254312027618,0.519254429183621,0.813472649219715,0,0,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,1.5740617341532,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0,0.571890581771475,0,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0,1.05650146756755,0,0.282810863907425,0,0.551365343546124,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,1.89996871767898,3.62224382255892,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.222886768554957,0,0.47748896947538,0.593929361665277,0.307160702099232,0,0,0,0,0,0.996239941255349,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,1.44999915086959,0,0,0.472775363535873,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0.307801034015188,0,0.46112780877612,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0.85381197895741,2.19790570540343,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859530882839914,0,1.39641200636127,0.229160424011684,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0.7520696820681,0.306345576763462,0.655745261419609,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,1.04478362020812,1.63599316893057,0,0,0.50313580350515,0,2.28840068396924,1.66354016139563,0.777186002913902,0.73927574994817,0,0,0,0.829412415681711,0.53168342911599,0,0.300515217994437,0.380805212168795,0,0,0,1.39210127963548,0,0,2.40376993627955,2.02049693259551,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.68732060563215,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0,0,0,0,1.11598505450025,0.924351257262837,2.59575937274273,0,0,0.380095503034311,0,0.26721740526556,0,0,0.303114792872958,0.535928260312357,0,0,0.426467963801962,0,0,0,0,0,0,0.435433495793923,1.02669990325584,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,1.33151354837103,1.00636896795513,0 | ||
|short_description=p@chr3:13612049..13612061,+ | |short_description=p@chr3:13612049..13612061,+ | ||
}} | }} |
Latest revision as of 16:10, 29 July 2015
Short description: | p@chr3:13612049..13612061, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:13612049..13612061, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 5.11e-27 | 15 |
adipocyte of omentum tissue | 5.13e-14 | 3 |
omentum preadipocyte | 3.00e-13 | 3 |
preadipocyte | 2.52e-12 | 12 |
adipocyte of breast | 7.79e-10 | 2 |
fibroblast | 7.84e-09 | 76 |
mesenchymal cell | 2.58e-08 | 354 |
mesenchymal stem cell of adipose | 3.55e-08 | 8 |
connective tissue cell | 5.43e-08 | 361 |
multi fate stem cell | 2.98e-07 | 427 |
somatic stem cell | 4.98e-07 | 433 |
motile cell | 7.34e-07 | 386 |
stem cell | 9.67e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.69e-25 | 6 |
peritoneum | 1.69e-25 | 6 |
abdominal cavity | 1.69e-25 | 6 |
visceral peritoneum | 1.69e-25 | 6 |
cavity lining | 1.29e-21 | 12 |
serous membrane | 1.29e-21 | 12 |
adipose tissue | 7.12e-18 | 14 |
breast | 1.66e-10 | 10 |
perirenal fat | 5.52e-10 | 2 |
chest | 1.61e-09 | 11 |
connective tissue | 1.49e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.27e-07 | 5 |
myotonic disease | 1.27e-07 | 5 |
muscle tissue disease | 1.27e-07 | 5 |
myopathy | 1.27e-07 | 5 |
muscular disease | 1.27e-07 | 5 |
myotonic dystrophy | 1.27e-07 | 5 |