FFCP PHASE1:Hg19::chr3:112356995..112357025,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112356995..112357025,+ | |||
|coexpression_cluster_id=C333 | |||
|description=CAGE_peak_at_chr3:112356995..112357025,+ | |description=CAGE_peak_at_chr3:112356995..112357025,+ | ||
|id=chr3:112356995..112357025,+ | |id=chr3:112356995..112357025,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.25e-23!180;CL:0000680!4.18e-17!57;CL:0000056!4.18e-17!57;CL:0000355!4.18e-17!57;CL:0000187!3.25e-16!54;CL:0000183!1.85e-15!59;CL:0000393!3.22e-13!60;CL:0000211!3.22e-13!60;CL:0000057!4.39e-13!75;CL:0000192!6.16e-12!42;CL:0000514!6.16e-12!42;CL:0002620!1.15e-11!23;CL:0000359!6.30e-11!32;CL:0000222!1.85e-07!119 | |ontology_enrichment_celltype=CL:0000055!1.25e-23!180;CL:0000680!4.18e-17!57;CL:0000056!4.18e-17!57;CL:0000355!4.18e-17!57;CL:0000187!3.25e-16!54;CL:0000183!1.85e-15!59;CL:0000393!3.22e-13!60;CL:0000211!3.22e-13!60;CL:0000057!4.39e-13!75;CL:0000192!6.16e-12!42;CL:0000514!6.16e-12!42;CL:0002620!1.15e-11!23;CL:0000359!6.30e-11!32;CL:0000222!1.85e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:1000306;2.06e-10;4!CL:0002547;2.06e-10;4!CL:0000153;3.53e-10;9!CL:0000447;3.53e-10;9!CL:0000136;5.74e-09;13!CL:0000499;9.83e-09;28!CL:0002615;1.31e-08;3!CL:0000135;1.97e-08;3!CL:0000388;1.97e-08;3!CL:0002595;3.94e-08;5!CL:0002577;7.39e-08;3!CL:0002580;1.71e-07;3!CL:0000138;3.89e-07;6!CL:0000197;7.45e-07;6!CL:0000098;7.45e-07;6!CL:0002167;7.45e-07;6!CL:0002334;9.75e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.99e-12,15;CL:1000306,1.40e-10,4;CL:0002547,1.40e-10,4;CL:0000153,2.08e-10,9;CL:0000447,2.08e-10,9;CL:0000057,9.78e-10,76;CL:0000048,6.53e-09,427;CL:0000499,9.07e-09,28;CL:0002615,1.02e-08,3;CL:0000723,1.41e-08,433;CL:0000135,2.23e-08,3;CL:0000388,2.23e-08,3;CL:0000034,3.79e-08,441;CL:0002595,4.46e-08,5;CL:0002577,6.54e-08,3;CL:0000680,9.47e-08,58;CL:0000056,9.47e-08,58;CL:0000355,9.47e-08,58;CL:0002580,1.43e-07,3;CL:0000058,2.42e-07,6;CL:0000138,2.42e-07,6;CL:0000197,6.13e-07,6;CL:0000098,6.13e-07,6;CL:0002167,6.13e-07,6;CL:0002334,6.95e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!6.71e-17!63;UBERON:0001015!6.71e-17!63;UBERON:0000383!6.71e-17!63;UBERON:0004290!8.29e-17!70;UBERON:0001134!4.62e-16!61;UBERON:0002036!4.62e-16!61;UBERON:0003082!4.62e-16!61;UBERON:0000914!1.69e-15!83;UBERON:0002329!1.69e-15!83;UBERON:0003077!1.69e-15!83;UBERON:0003059!1.69e-15!83;UBERON:0007282!1.69e-15!83;UBERON:0009618!1.69e-15!83;UBERON:0007285!1.69e-15!83;UBERON:0000486!1.01e-14!82;UBERON:0004872!5.75e-10!84;UBERON:0001637!2.85e-09!42;UBERON:0003509!2.85e-09!42;UBERON:0004572!2.85e-09!42;UBERON:0004923!3.88e-08!57;UBERON:0002199!7.21e-08!45;UBERON:0002416!7.21e-08!45;UBERON:0004573!1.36e-07!33;UBERON:0004571!1.36e-07!33;UBERON:0001981!4.33e-07!60;UBERON:0007500!4.33e-07!60;UBERON:0004537!4.33e-07!60;UBERON:0006965!4.33e-07!60;UBERON:0005256!7.69e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.14e-14;9!UBERON:0000042;5.14e-14;9!UBERON:0003688;4.10e-11;6!UBERON:0002358;4.10e-11;6!UBERON:0003684;4.10e-11;6!UBERON:0001178;4.10e-11;6!UBERON:0004797;2.06e-10;4!UBERON:0000415;2.06e-10;4!UBERON:0007240;2.06e-10;4!UBERON:0005742;2.06e-10;4!UBERON:0005734;2.06e-10;4!UBERON:0004664;2.06e-10;4!UBERON:0004663;2.06e-10;4!UBERON:0007846;1.97e-08;3!UBERON:0000043;1.97e-08;3!UBERON:0007845;1.97e-08;3!UBERON:0003834;3.94e-08;5!UBERON:0001533;3.94e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.05e-11,6;UBERON:0002358,3.05e-11,6;UBERON:0003684,3.05e-11,6;UBERON:0001178,3.05e-11,6;UBERON:0000415,1.40e-10,4;UBERON:0007240,1.40e-10,4;UBERON:0005742,1.40e-10,4;UBERON:0005734,1.40e-10,4;UBERON:0004664,1.40e-10,4;UBERON:0004663,1.40e-10,4;UBERON:0004457,2.69e-10,12;UBERON:0000042,2.69e-10,12;UBERON:0007846,2.23e-08,3;UBERON:0000043,2.23e-08,3;UBERON:0007845,2.23e-08,3;UBERON:0003834,4.46e-08,5;UBERON:0001533,4.46e-08,5;UBERON:0001134,5.31e-07,62;UBERON:0002036,5.31e-07,62;UBERON:0003082,5.31e-07,62;UBERON:0007524,5.82e-07,73;UBERON:0004573,7.88e-07,33;UBERON:0004571,7.88e-07,33 | |||
|phase1_expression=1.81678379270557,2.78330681058278,1.69145284915165,3.00219895059391,5.36353313312745,11.3404008133048,0,0.631719873426831,2.08948502559871,0,0,0,0.791300934685361,0.37129905888014,1.32558950291166,0.672325146451775,0,0,1.46379839637152,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.91793842765295,2.89151321907653,2.50668955317945,4.20054904986389,0,1.94653948121054,0,0.221729397462564,0.175669571386252,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.91250176828533,1.32409180813219,6.59724227722272,1.77334191099179,1.12135520028461,0,0.74000264525148,0,0.134710672069688,0,0.302714855289863,1.15235184896,0,0.312160076830321,0,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.567160915800105,1.25572744982203,0.85422955527427,0.847727604638247,2.40072876867522,0.412210116953756,1.54584324027377,0.37223371266318,1.85653965465393,0.389748020644795,2.52433774244115,1.38074847963449,0.80823028409406,1.77504796258307,0.806016785821122,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,0,1.28648187638577,0,1.85747171212792,2.88751792667834,0,0,0.241011029883482,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0.87192013766656,0.22001485746285,1.03417372606222,0,0.845302752556,0,1.04007436911366,0,0,0,0.142977993658148,0.542621605391443,0,1.62868092146868,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.479249710983165,0,0,1.88215698667853,1.64381058040307,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0.500170521059677,0.813795071099207,1.45579603071565,3.56857977594324,1.57702415033935,2.57711112983969,0.300946099727719,0,0,0,0.368738337083406,0,0.391602314925481,0.343143423810856,0,0,0,1.21251028578504,1.66435439510497,2.72151263996712,1.48864684691266,1.07423381301644,1.96462066103151,2.81906128362542,0,4.02134802859019,0,0.308419387605311,0.710246901252508,0.410635780069046,0,1.85936605535935,0,0.200506470303285,0,0.68888668898764,1.0925470080403,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0.325378394664303,0,0.0915694648183434,0.165018999841176,0,0,0,0.290012154876366,1.3864375540318,0.921022048356777,0.689182862422653,0.214840489736547,0.435050081742686,0.340906509664404,0.712256285173899,0,0,0,0,1.85938219718914,3.46293581513704,0.6970372701606,0.616067160352178,0,0.869932992075073,0.55597265731176,0.143124886741991,0.372158369359667,0,1.33441135746677,0.255897791311334,0.42793898803392,0.318203247925937,0,0.899362287916574,0.823611089208164,0.471249609382746,0.404364963146632,0,0.842516912477962,0,2.43713489631284,1.05650146756755,1.09199929126389,1.1312434556297,0,0,1.99031692572366,2.19225442626881,0,0,0.811641507850816,0.92947049429925,3.3803472303869,0.573645408816206,1.27723753317057,0.7133421029625,0,3.79993743535795,4.93942339439853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.890894042497916,0,0,0,0,0,0,0.398495976502139,0,0,0,0,1.55519793830904,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.0884575645033392,0,0.593042257361244,0.123563938946503,0,0,0.802577647298789,0,0,0,0,0.789168805698781,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.609414446062818,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0.137041924646751,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0.837847203816763,0.458320848023367,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0,0,0.714695326373367,0,0,0,2.5926644736038,0.979762080328227,1.19730191562487,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0.701139929541673,1.10961172300523,0.568209015825267,2.51567901752575,0,0.457680136793847,1.51230923763239,0.310874401165561,0,0.318593534327405,0.449803112163605,0,1.65882483136342,0.53168342911599,2.08698024724694,0.901545653983311,0.761610424337591,0,0,0.214821114084977,0.928067519756987,0,0,1.37358282073117,1.01024846629776,0,0,0,0,0.226705925512272,0.694567422971502,0.244736704506468,0.358177682162975,0,2.19284049578707,0.530067437837643,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0.567515953566836,0,0,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,3.18004350653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| ||
|short_description=p@chr3:112356995..112357025,+ | |short_description=p@chr3:112356995..112357025,+ | ||
}} | }} | ||
Latest revision as of 14:17, 29 July 2015
| Short description: | p@chr3:112356995..112357025, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr3:112356995..112357025, + |
| Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fat cell | 3.99e-12 | 15 |
| fibroblast of tunica adventitia of artery | 1.40e-10 | 4 |
| fibroblast of the aortic adventitia | 1.40e-10 | 4 |
| GAG secreting cell | 2.08e-10 | 9 |
| carbohydrate secreting cell | 2.08e-10 | 9 |
| fibroblast | 9.78e-10 | 76 |
| multi fate stem cell | 6.53e-09 | 427 |
| stromal cell | 9.07e-09 | 28 |
| adipocyte of omentum tissue | 1.02e-08 | 3 |
| somatic stem cell | 1.41e-08 | 433 |
| fibrocyte | 2.23e-08 | 3 |
| tendon cell | 2.23e-08 | 3 |
| stem cell | 3.79e-08 | 441 |
| smooth muscle cell of the subclavian artery | 4.46e-08 | 5 |
| placental epithelial cell | 6.54e-08 | 3 |
| muscle precursor cell | 9.47e-08 | 58 |
| myoblast | 9.47e-08 | 58 |
| multi-potent skeletal muscle stem cell | 9.47e-08 | 58 |
| preadipocyte of the breast | 1.43e-07 | 3 |
| chondroblast | 2.42e-07 | 6 |
| chondrocyte | 2.42e-07 | 6 |
| receptor cell | 6.13e-07 | 6 |
| sensory epithelial cell | 6.13e-07 | 6 |
| olfactory epithelial cell | 6.13e-07 | 6 |
| preadipocyte | 6.95e-07 | 12 |
| Ontology term | p-value | n |
|---|---|---|
| omentum | 3.05e-11 | 6 |
| peritoneum | 3.05e-11 | 6 |
| abdominal cavity | 3.05e-11 | 6 |
| visceral peritoneum | 3.05e-11 | 6 |
| artery wall | 1.40e-10 | 4 |
| tunica adventitia of artery | 1.40e-10 | 4 |
| adventitia | 1.40e-10 | 4 |
| tunica adventitia of blood vessel | 1.40e-10 | 4 |
| aorta tunica adventitia | 1.40e-10 | 4 |
| aorta wall | 1.40e-10 | 4 |
| cavity lining | 2.69e-10 | 12 |
| serous membrane | 2.69e-10 | 12 |
| dense regular connective tissue | 2.23e-08 | 3 |
| tendon | 2.23e-08 | 3 |
| regular connective tissue | 2.23e-08 | 3 |
| thoracic segment blood vessel | 4.46e-08 | 5 |
| subclavian artery | 4.46e-08 | 5 |
| skeletal muscle tissue | 5.31e-07 | 62 |
| striated muscle tissue | 5.31e-07 | 62 |
| myotome | 5.31e-07 | 62 |
| dense mesenchyme tissue | 5.82e-07 | 73 |
| systemic artery | 7.88e-07 | 33 |
| systemic arterial system | 7.88e-07 | 33 |