FFCP PHASE1:Hg19::chr3:112316658..112316667,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112316658..112316667,- | |||
|coexpression_cluster_id=C1078 | |coexpression_cluster_id=C1078 | ||
|description=CAGE_peak_at_chr3:112316658..112316667,- | |description=CAGE_peak_at_chr3:112316658..112316667,- | ||
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|ontology_enrichment_celltype=CL:0000057!7.23e-14!75;CL:0002620!4.58e-13!23;CL:0002334!1.09e-10!12;CL:0000055!3.82e-10!180;CL:0000136!2.68e-07!15;CL:1000306!4.62e-07!4;CL:0002547!4.62e-07!4 | |ontology_enrichment_celltype=CL:0000057!7.23e-14!75;CL:0002620!4.58e-13!23;CL:0002334!1.09e-10!12;CL:0000055!3.82e-10!180;CL:0000136!2.68e-07!15;CL:1000306!4.62e-07!4;CL:0002547!4.62e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.69e-17;9!CL:0000447;2.69e-17;9!CL:0002561;2.10e-13;2!CL:0002559;9.27e-12;5!CL:0000327;2.65e-10;15!CL:0000499;4.15e-10;28!CL:0000138;6.97e-10;6!CL:0002615;9.51e-10;3!CL:0000214;1.73e-09;3!CL:0000135;3.11e-09;3!CL:0000388;3.11e-09;3!CL:0000136;3.36e-08;13!CL:0002616;4.27e-08;1!CL:0002581;1.53e-07;1!CL:1000306;2.32e-07;4!CL:0002547;2.32e-07;4 | |ontology_enrichment_celltype_v019=CL:0000153;2.69e-17;9!CL:0000447;2.69e-17;9!CL:0002561;2.10e-13;2!CL:0002559;9.27e-12;5!CL:0000327;2.65e-10;15!CL:0000499;4.15e-10;28!CL:0000138;6.97e-10;6!CL:0002615;9.51e-10;3!CL:0000214;1.73e-09;3!CL:0000135;3.11e-09;3!CL:0000388;3.11e-09;3!CL:0000136;3.36e-08;13!CL:0002616;4.27e-08;1!CL:0002581;1.53e-07;1!CL:1000306;2.32e-07;4!CL:0002547;2.32e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.40e-17,9;CL:0000447,2.40e-17,9;CL:0002561,1.19e-13,2;CL:0002559,7.59e-12,5;CL:0000327,2.48e-10,15;CL:0000499,3.84e-10,28;CL:0000058,6.68e-10,6;CL:0000138,6.68e-10,6;CL:0002615,1.04e-09,3;CL:0000214,1.59e-09,3;CL:0000135,2.87e-09,3;CL:0000388,2.87e-09,3;CL:0002616,4.28e-08,1;CL:0002581,1.39e-07,1;CL:1000306,3.18e-07,4;CL:0002547,3.18e-07,4;CL:0000136,4.00e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!2.50e-08!5;DOID:450!2.50e-08!5;DOID:66!2.50e-08!5;DOID:423!2.50e-08!5;DOID:0080000!2.50e-08!5;DOID:11722!2.50e-08!5 | |ontology_enrichment_disease=DOID:17!2.50e-08!5;DOID:450!2.50e-08!5;DOID:66!2.50e-08!5;DOID:423!2.50e-08!5;DOID:0080000!2.50e-08!5;DOID:11722!2.50e-08!5 | ||
|ontology_enrichment_disease_v019=DOID:0060084;3.11e-09;3!DOID:127;3.11e-09;3!DOID:0060072;3.94e-07;4 | |ontology_enrichment_disease_v019=DOID:0060084;3.11e-09;3!DOID:127;3.11e-09;3!DOID:0060072;3.94e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.26e-09,3;DOID:127,3.26e-09,3;DOID:0060072,4.08e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.30e-11!45;UBERON:0002416!1.30e-11!45;UBERON:0002097!3.40e-10!40;UBERON:0004457!4.61e-08!12;UBERON:0000042!4.61e-08!12;UBERON:0003102!1.09e-07!95;UBERON:0003688!1.53e-07!6;UBERON:0002358!1.53e-07!6;UBERON:0003684!1.53e-07!6;UBERON:0001178!1.53e-07!6;UBERON:0000415!4.62e-07!4;UBERON:0007240!4.62e-07!4;UBERON:0005742!4.62e-07!4;UBERON:0005734!4.62e-07!4;UBERON:0004664!4.62e-07!4;UBERON:0004663!4.62e-07!4 | |ontology_enrichment_uberon=UBERON:0002199!1.30e-11!45;UBERON:0002416!1.30e-11!45;UBERON:0002097!3.40e-10!40;UBERON:0004457!4.61e-08!12;UBERON:0000042!4.61e-08!12;UBERON:0003102!1.09e-07!95;UBERON:0003688!1.53e-07!6;UBERON:0002358!1.53e-07!6;UBERON:0003684!1.53e-07!6;UBERON:0001178!1.53e-07!6;UBERON:0000415!4.62e-07!4;UBERON:0007240!4.62e-07!4;UBERON:0005742!4.62e-07!4;UBERON:0005734!4.62e-07!4;UBERON:0004664!4.62e-07!4;UBERON:0004663!4.62e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;5.64e-18;9!UBERON:0000042;5.64e-18;9!UBERON:0005406;6.04e-14;2!UBERON:0005933;2.10e-13;2!UBERON:0005942;2.10e-13;2!UBERON:0005932;2.10e-13;2!UBERON:0002073;9.27e-12;5!UBERON:0003688;1.71e-10;6!UBERON:0002358;1.71e-10;6!UBERON:0003684;1.71e-10;6!UBERON:0001178;1.71e-10;6!UBERON:0006915;1.73e-09;3!UBERON:0007616;1.73e-09;3!UBERON:0002217;1.73e-09;3!UBERON:0002018;1.73e-09;3!UBERON:0007846;3.11e-09;3!UBERON:0000043;3.11e-09;3!UBERON:0007845;3.11e-09;3!UBERON:0004905;1.15e-07;8!UBERON:0000982;1.15e-07;8!UBERON:0004770;1.15e-07;8!UBERON:0007195;1.53e-07;1!UBERON:0004797;2.32e-07;4!UBERON:0000415;2.32e-07;4!UBERON:0007240;2.32e-07;4!UBERON:0005742;2.32e-07;4!UBERON:0005734;2.32e-07;4!UBERON:0004664;2.32e-07;4!UBERON:0004663;2.32e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0004457;5.64e-18;9!UBERON:0000042;5.64e-18;9!UBERON:0005406;6.04e-14;2!UBERON:0005933;2.10e-13;2!UBERON:0005942;2.10e-13;2!UBERON:0005932;2.10e-13;2!UBERON:0002073;9.27e-12;5!UBERON:0003688;1.71e-10;6!UBERON:0002358;1.71e-10;6!UBERON:0003684;1.71e-10;6!UBERON:0001178;1.71e-10;6!UBERON:0006915;1.73e-09;3!UBERON:0007616;1.73e-09;3!UBERON:0002217;1.73e-09;3!UBERON:0002018;1.73e-09;3!UBERON:0007846;3.11e-09;3!UBERON:0000043;3.11e-09;3!UBERON:0007845;3.11e-09;3!UBERON:0004905;1.15e-07;8!UBERON:0000982;1.15e-07;8!UBERON:0004770;1.15e-07;8!UBERON:0007195;1.53e-07;1!UBERON:0004797;2.32e-07;4!UBERON:0000415;2.32e-07;4!UBERON:0007240;2.32e-07;4!UBERON:0005742;2.32e-07;4!UBERON:0005734;2.32e-07;4!UBERON:0004664;2.32e-07;4!UBERON:0004663;2.32e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005406,5.52e-14,2;UBERON:0005933,1.19e-13,2;UBERON:0005942,1.19e-13,2;UBERON:0005932,1.19e-13,2;UBERON:0004457,1.96e-13,12;UBERON:0000042,1.96e-13,12;UBERON:0002073,7.59e-12,5;UBERON:0005086,7.59e-12,5;UBERON:0003688,1.80e-10,6;UBERON:0002358,1.80e-10,6;UBERON:0003684,1.80e-10,6;UBERON:0001178,1.80e-10,6;UBERON:0006915,1.59e-09,3;UBERON:0007616,1.59e-09,3;UBERON:0002217,1.59e-09,3;UBERON:0002018,1.59e-09,3;UBERON:0007846,2.87e-09,3;UBERON:0000043,2.87e-09,3;UBERON:0007845,2.87e-09,3;UBERON:0004905,1.43e-07,8;UBERON:0000982,1.43e-07,8;UBERON:0004770,1.43e-07,8;UBERON:0007195,2.31e-07,1;UBERON:0000415,3.18e-07,4;UBERON:0007240,3.18e-07,4;UBERON:0005742,3.18e-07,4;UBERON:0005734,3.18e-07,4;UBERON:0004664,3.18e-07,4;UBERON:0004663,3.18e-07,4 | |||
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|short_description=p@chr3:112316658..112316667,- | |short_description=p@chr3:112316658..112316667,- | ||
}} | }} |
Latest revision as of 14:17, 29 July 2015
Short description: | p@chr3:112316658..112316667, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112316658..112316667, - |
Coexpression cluster: | C1078_Cardiac_Preadipocyte_Fibroblast_Chondrocyte_Synoviocyte_Ewing_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.40e-17 | 9 |
carbohydrate secreting cell | 2.40e-17 | 9 |
outer root sheath cell | 1.19e-13 | 2 |
hair follicle cell | 7.59e-12 | 5 |
extracellular matrix secreting cell | 2.48e-10 | 15 |
stromal cell | 3.84e-10 | 28 |
chondroblast | 6.68e-10 | 6 |
chondrocyte | 6.68e-10 | 6 |
adipocyte of omentum tissue | 1.04e-09 | 3 |
synovial cell | 1.59e-09 | 3 |
fibrocyte | 2.87e-09 | 3 |
tendon cell | 2.87e-09 | 3 |
perirenal adipocyte cell | 4.28e-08 | 1 |
perirenal preadipocyte | 1.39e-07 | 1 |
fibroblast of tunica adventitia of artery | 3.18e-07 | 4 |
fibroblast of the aortic adventitia | 3.18e-07 | 4 |
fat cell | 4.00e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
perirenal fat | 5.52e-14 | 2 |
hair root sheath | 1.19e-13 | 2 |
hair outer root sheath | 1.19e-13 | 2 |
bulb of hair follicle | 1.19e-13 | 2 |
cavity lining | 1.96e-13 | 12 |
serous membrane | 1.96e-13 | 12 |
hair follicle | 7.59e-12 | 5 |
hair follicle placode | 7.59e-12 | 5 |
omentum | 1.80e-10 | 6 |
peritoneum | 1.80e-10 | 6 |
abdominal cavity | 1.80e-10 | 6 |
visceral peritoneum | 1.80e-10 | 6 |
stratified squamous epithelium | 1.59e-09 | 3 |
layer of synovial tissue | 1.59e-09 | 3 |
synovial joint | 1.59e-09 | 3 |
synovial membrane of synovial joint | 1.59e-09 | 3 |
dense regular connective tissue | 2.87e-09 | 3 |
tendon | 2.87e-09 | 3 |
regular connective tissue | 2.87e-09 | 3 |
articulation | 1.43e-07 | 8 |
skeletal joint | 1.43e-07 | 8 |
articular system | 1.43e-07 | 8 |
stroma of bone marrow | 2.31e-07 | 1 |
artery wall | 3.18e-07 | 4 |
tunica adventitia of artery | 3.18e-07 | 4 |
adventitia | 3.18e-07 | 4 |
tunica adventitia of blood vessel | 3.18e-07 | 4 |
aorta tunica adventitia | 3.18e-07 | 4 |
aorta wall | 3.18e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.26e-09 | 3 |
leiomyoma | 3.26e-09 | 3 |
benign neoplasm | 4.08e-07 | 4 |