FFCP PHASE1:Hg19::chr2:65257873..65257887,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:65257873..65257887,+ | |||
|coexpression_cluster_id=C682 | |coexpression_cluster_id=C682 | ||
|description=CAGE_peak_at_chr2:65257873..65257887,+ | |description=CAGE_peak_at_chr2:65257873..65257887,+ | ||
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|ontology_enrichment_celltype=CL:0000945!1.55e-51!24;CL:0000826!1.55e-51!24;CL:0000236!6.35e-43!14;CL:0000542!4.58e-23!53;CL:0000051!4.58e-23!53;CL:0000838!4.26e-21!52;CL:0002087!1.64e-11!119;CL:0000738!5.73e-11!140;CL:0002031!9.19e-09!124;CL:0000037!8.05e-08!172;CL:0000566!8.05e-08!172;CL:0000785!1.01e-07!2;CL:0000955!1.01e-07!2;CL:0000818!1.01e-07!2;CL:0000954!1.01e-07!2;CL:0000816!1.01e-07!2;CL:0000988!4.47e-07!182;CL:0002032!7.75e-07!165;CL:0000837!7.75e-07!165 | |ontology_enrichment_celltype=CL:0000945!1.55e-51!24;CL:0000826!1.55e-51!24;CL:0000236!6.35e-43!14;CL:0000542!4.58e-23!53;CL:0000051!4.58e-23!53;CL:0000838!4.26e-21!52;CL:0002087!1.64e-11!119;CL:0000738!5.73e-11!140;CL:0002031!9.19e-09!124;CL:0000037!8.05e-08!172;CL:0000566!8.05e-08!172;CL:0000785!1.01e-07!2;CL:0000955!1.01e-07!2;CL:0000818!1.01e-07!2;CL:0000954!1.01e-07!2;CL:0000816!1.01e-07!2;CL:0000988!4.47e-07!182;CL:0002032!7.75e-07!165;CL:0000837!7.75e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.94e-82;13!CL:0000945;6.52e-62;24!CL:0000542;1.34e-24;53 | |ontology_enrichment_celltype_v019=CL:0000236;2.94e-82;13!CL:0000945;6.52e-62;24!CL:0000542;1.34e-24;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.61e-76,14;CL:0000945,6.21e-62,24;CL:0000826,6.21e-62,24;CL:0000542,2.70e-31,53;CL:0000051,2.70e-31,53;CL:0000838,1.66e-27,52;CL:0002087,4.69e-13,115;CL:0000738,1.08e-10,136;CL:0002031,1.31e-10,120;CL:0002032,1.11e-08,161;CL:0000837,1.11e-08,161;CL:0000037,3.20e-08,168;CL:0000988,1.10e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.34e-24;53!UBERON:0004872;2.60e-12;7!UBERON:0001045;8.14e-11;1!UBERON:0008801;2.62e-10;1!UBERON:0006298;3.96e-10;1 | |ontology_enrichment_development_v019=CL:0000051;1.34e-24;53!UBERON:0004872;2.60e-12;7!UBERON:0001045;8.14e-11;1!UBERON:0008801;2.62e-10;1!UBERON:0006298;3.96e-10;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:12603;3.96e-10;1 | |ontology_enrichment_disease_v019=DOID:12603;3.96e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:12603,4.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.07e-12!115;UBERON:0004177!1.34e-08!7;UBERON:0001829!1.50e-08!2 | |ontology_enrichment_uberon=UBERON:0007023!8.07e-12!115;UBERON:0004177!1.34e-08!7;UBERON:0001829!1.50e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.08e-18;2!UBERON:0002106;3.06e-13;3!UBERON:0001154;8.14e-11;1!UBERON:0001153;8.14e-11;1!UBERON:0009854;8.14e-11;1!UBERON:0002372;1.24e-10;1!UBERON:0001961;1.24e-10;1!UBERON:0001744;1.24e-10;1!UBERON:0001042;1.24e-10;1!UBERON:0001735;1.24e-10;1!UBERON:0001831;2.62e-10;1!UBERON:0001567;2.62e-10;1!UBERON:0001736;3.96e-10;1!UBERON:0004177;2.68e-08;5!UBERON:0005057;2.68e-08;5!UBERON:0001044;7.86e-07;6!UBERON:0003293;7.86e-07;6!UBERON:0003294;7.86e-07;6!UBERON:0010047;7.86e-07;6!UBERON:0003408;7.86e-07;6!UBERON:0000167;7.86e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0001829;1.08e-18;2!UBERON:0002106;3.06e-13;3!UBERON:0001154;8.14e-11;1!UBERON:0001153;8.14e-11;1!UBERON:0009854;8.14e-11;1!UBERON:0002372;1.24e-10;1!UBERON:0001961;1.24e-10;1!UBERON:0001744;1.24e-10;1!UBERON:0001042;1.24e-10;1!UBERON:0001735;1.24e-10;1!UBERON:0001831;2.62e-10;1!UBERON:0001567;2.62e-10;1!UBERON:0001736;3.96e-10;1!UBERON:0004177;2.68e-08;5!UBERON:0005057;2.68e-08;5!UBERON:0001044;7.86e-07;6!UBERON:0003293;7.86e-07;6!UBERON:0003294;7.86e-07;6!UBERON:0010047;7.86e-07;6!UBERON:0003408;7.86e-07;6!UBERON:0000167;7.86e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.13e-18,2;UBERON:0002106,3.36e-13,3;UBERON:0004854,3.36e-13,3;UBERON:0009034,3.36e-13,3;UBERON:0002095,3.36e-13,3;UBERON:0004782,3.36e-13,3;UBERON:0003281,3.36e-13,3;UBERON:0009664,3.36e-13,3;UBERON:0002296,3.36e-13,3;UBERON:0005602,3.36e-13,3;UBERON:0001179,3.36e-13,3;UBERON:0006293,3.36e-13,3;UBERON:0001154,8.14e-11,1;UBERON:0001153,8.14e-11,1;UBERON:0001045,8.14e-11,1;UBERON:0002372,1.19e-10,1;UBERON:0001961,1.19e-10,1;UBERON:0001744,1.19e-10,1;UBERON:0001735,1.19e-10,1;UBERON:0001831,3.01e-10,1;UBERON:0001567,3.01e-10,1;UBERON:0008801,3.01e-10,1;UBERON:0001736,3.61e-10,1;UBERON:0006298,3.61e-10,1;UBERON:0001044,7.98e-07,6;UBERON:0003293,7.98e-07,6;UBERON:0003294,7.98e-07,6;UBERON:0010047,7.98e-07,6;UBERON:0000167,7.98e-07,6 | |||
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| ||
|short_description=p@chr2:65257873..65257887,+ | |short_description=p@chr2:65257873..65257887,+ | ||
}} | }} |
Latest revision as of 11:29, 29 July 2015
Short description: | p@chr2:65257873..65257887, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:65257873..65257887, + |
Coexpression cluster: | C682_Burkitt_lymphoma_CD19_appendix_tonsil_spleen_diffuse |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.61e-76 | 14 |
lymphocyte of B lineage | 6.21e-62 | 24 |
pro-B cell | 6.21e-62 | 24 |
lymphocyte | 2.70e-31 | 53 |
common lymphoid progenitor | 2.70e-31 | 53 |
lymphoid lineage restricted progenitor cell | 1.66e-27 | 52 |
nongranular leukocyte | 4.69e-13 | 115 |
leukocyte | 1.08e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 1.31e-10 | 120 |
hematopoietic oligopotent progenitor cell | 1.11e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-08 | 161 |
hematopoietic stem cell | 3.20e-08 | 168 |
hematopoietic cell | 1.10e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.13e-18 | 2 |
spleen | 3.36e-13 | 3 |
gastrointestinal system mesentery | 3.36e-13 | 3 |
stomach region | 3.36e-13 | 3 |
mesentery | 3.36e-13 | 3 |
gastrointestinal system serosa | 3.36e-13 | 3 |
mesentery of stomach | 3.36e-13 | 3 |
gut mesentery | 3.36e-13 | 3 |
dorsal mesentery | 3.36e-13 | 3 |
dorsal mesogastrium | 3.36e-13 | 3 |
peritoneal cavity | 3.36e-13 | 3 |
spleen primordium | 3.36e-13 | 3 |
vermiform appendix | 8.14e-11 | 1 |
caecum | 8.14e-11 | 1 |
midgut | 8.14e-11 | 1 |
tonsil | 1.19e-10 | 1 |
mucosa-associated lymphoid tissue | 1.19e-10 | 1 |
lymphoid tissue | 1.19e-10 | 1 |
tonsillar ring | 1.19e-10 | 1 |
parotid gland | 3.01e-10 | 1 |
cheek | 3.01e-10 | 1 |
parotid gland primordium | 3.01e-10 | 1 |
submandibular gland | 3.61e-10 | 1 |
submandibular gland primordium | 3.61e-10 | 1 |
saliva-secreting gland | 7.98e-07 | 6 |
gland of oral region | 7.98e-07 | 6 |
gland of foregut | 7.98e-07 | 6 |
oral gland | 7.98e-07 | 6 |
oral cavity | 7.98e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 4.33e-10 | 1 |