FFCP PHASE1:Hg19::chr2:48919688..48919703,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:48919688..48919703,+ | |||
|coexpression_cluster_id=C232 | |||
|description=CAGE_peak_at_chr2:48919688..48919703,+ | |||
|id=chr2:48919688..48919703,+ | |||
|ontology_enrichment_celltype=CL:0000128!3.39e-49!7;CL:0000126!3.39e-49!7;CL:0000127!3.39e-49!7;CL:0002453!3.39e-49!7;CL:0000133!5.54e-26!59;CL:0002319!1.87e-24!25;CL:0002603!3.52e-22!3;CL:0002605!6.21e-22!3;CL:0000221!3.37e-21!71;CL:0000064!1.08e-20!3;CL:0005012!1.08e-20!3;CL:0000067!1.08e-20!3;CL:0002304!1.08e-20!3;CL:0000243!8.18e-20!15;CL:0000125!8.18e-20!15;CL:0000030!8.18e-20!15;CL:0000339!8.18e-20!15;CL:0000095!1.21e-17!17;CL:0000123!1.21e-17!17;CL:0000333!1.05e-14!41;CL:0000540!6.25e-11!6;CL:0000031!6.25e-11!6;CL:0000404!6.25e-11!6;CL:0000039!1.58e-09!7;CL:0000586!1.58e-09!7;CL:0000075!1.45e-08!27;CL:0000047!2.56e-08!8;CL:0000710!2.83e-08!20 | |||
|ontology_enrichment_celltype_v019=CL:0000128;6.56e-78;7!CL:0000126;6.56e-78;7!CL:0000127;6.56e-78;7!CL:0000243;2.27e-32;15!CL:0000125;2.27e-32;15!CL:0002603;2.87e-30;3!CL:0002605;5.61e-30;3!CL:0000095;5.28e-29;17!CL:0002319;1.64e-20;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,8.34e-78,7;CL:0000126,8.34e-78,7;CL:0000127,8.34e-78,7;CL:0002453,8.34e-78,7;CL:0000243,2.51e-32,15;CL:0000125,2.51e-32,15;CL:0000030,2.51e-32,15;CL:0000339,2.51e-32,15;CL:0002603,3.10e-30,3;CL:0002605,6.50e-30,3;CL:0000095,5.76e-29,17;CL:0000123,5.76e-29,17;CL:0002319,1.74e-20,25;CL:0000333,5.87e-13,41;CL:0000133,3.49e-09,59;CL:0000221,1.37e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000339;2.27e-32;15!UBERON:0009117;8.27e-10;10!UBERON:0005564;8.27e-10;10!CL:0000133;8.05e-08;59 | |||
|ontology_enrichment_disease=DOID:6193!1.31e-08!1;DOID:3095!6.52e-08!22;DOID:2994!6.52e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:6193;4.10e-23;1!DOID:3350;2.90e-12;2!DOID:3095;9.54e-10;22!DOID:2994;9.54e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,2.62e-23,1;DOID:3350,2.32e-12,2;DOID:3095,9.69e-10,22;DOID:2994,9.69e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.08e-20!3;UBERON:0001775!1.08e-20!3;UBERON:0000488!1.12e-15!4;UBERON:0002200!3.30e-15!11;UBERON:0006876!3.30e-15!11;UBERON:0002037!2.30e-11!6;UBERON:0006215!2.30e-11!6;UBERON:0002203!1.23e-10!6;UBERON:0001768!1.23e-10!6;UBERON:0007625!4.46e-10!11;UBERON:0001017!8.36e-10!82;UBERON:0004121!1.57e-09!169;UBERON:0005743!2.93e-09!86;UBERON:0000924!3.11e-09!173;UBERON:0006601!3.11e-09!173;UBERON:0000473!2.14e-08!8;UBERON:0000073!3.38e-08!94;UBERON:0001016!3.38e-08!94;UBERON:0001801!6.03e-08!14;UBERON:0002680!9.96e-08!9;UBERON:0001895!9.96e-08!9;UBERON:0010092!9.96e-08!9;UBERON:0003075!1.04e-07!86;UBERON:0007284!1.04e-07!86;UBERON:0002346!2.75e-07!90;UBERON:0000033!5.65e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.09e-15;6!UBERON:0002680;8.57e-11;9!UBERON:0001895;8.57e-11;9!UBERON:0004733;2.51e-08;12!UBERON:0002028;2.51e-08;12!UBERON:0004732;9.35e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.13e-15,6;UBERON:0006215,1.13e-15,6;UBERON:0002680,8.79e-11,9;UBERON:0001895,8.79e-11,9;UBERON:0010092,8.79e-11,9;UBERON:0004733,2.55e-08,12;UBERON:0002028,2.55e-08,12;UBERON:0007277,2.55e-08,12;UBERON:0000955,5.12e-08,68;UBERON:0006238,5.12e-08,68;UBERON:0004732,9.51e-08,13;UBERON:0000073,7.05e-07,53;UBERON:0002616,7.05e-07,53;UBERON:0003076,7.86e-07,15;UBERON:0003057,7.86e-07,15;UBERON:0001017,8.95e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44738962615006,0.816002764977012,1.56727360739044,1.71741592278634,1.09499540058307,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14764233254525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89184635718778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.91115916988745,9.8339014767326,0,1.1218771271618,0.26721740526556,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:48919688..48919703,+ | |||
}} |
Latest revision as of 10:39, 29 July 2015
Short description: | p@chr2:48919688..48919703, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:48919688..48919703, + |
Coexpression cluster: | C232_teratocarcinoma_HES3GFP_H9_iPS_testicular_neuroblastoma_cerebellum |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 8.34e-78 | 7 |
macroglial cell | 8.34e-78 | 7 |
astrocyte | 8.34e-78 | 7 |
oligodendrocyte precursor cell | 8.34e-78 | 7 |
glial cell (sensu Vertebrata) | 2.51e-32 | 15 |
glial cell | 2.51e-32 | 15 |
glioblast | 2.51e-32 | 15 |
glioblast (sensu Vertebrata) | 2.51e-32 | 15 |
astrocyte of the cerebellum | 3.10e-30 | 3 |
astrocyte of the cerebral cortex | 6.50e-30 | 3 |
neuron associated cell | 5.76e-29 | 17 |
neuron associated cell (sensu Vertebrata) | 5.76e-29 | 17 |
neural cell | 1.74e-20 | 25 |
migratory neural crest cell | 5.87e-13 | 41 |
neurectodermal cell | 3.49e-09 | 59 |
ectodermal cell | 1.37e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.13e-15 | 6 |
rhombic lip | 1.13e-15 | 6 |
regional part of metencephalon | 8.79e-11 | 9 |
metencephalon | 8.79e-11 | 9 |
future metencephalon | 8.79e-11 | 9 |
segmental subdivision of hindbrain | 2.55e-08 | 12 |
hindbrain | 2.55e-08 | 12 |
presumptive hindbrain | 2.55e-08 | 12 |
brain | 5.12e-08 | 68 |
future brain | 5.12e-08 | 68 |
segmental subdivision of nervous system | 9.51e-08 | 13 |
regional part of nervous system | 7.05e-07 | 53 |
regional part of brain | 7.05e-07 | 53 |
posterior neural tube | 7.86e-07 | 15 |
chordal neural plate | 7.86e-07 | 15 |
central nervous system | 8.95e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 2.62e-23 | 1 |
mesenchymal cell neoplasm | 2.32e-12 | 2 |
germ cell and embryonal cancer | 9.69e-10 | 22 |
germ cell cancer | 9.69e-10 | 22 |