FFCP PHASE1:Hg19::chr2:45168959..45168990,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6496 | |EntrezGene=entrezgene:6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10889 | |HGNC=HGNC:10889 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=O95343 | |UniProt=uniprot:O95343 | ||
|association_with_transcript=-46bp_to_NM_005413,uc002run.1_5end | |association_with_transcript=-46bp_to_NM_005413,uc002run.1_5end | ||
|cluster_id=chr2:45168959..45168990,+ | |||
|coexpression_cluster_id=C1905 | |coexpression_cluster_id=C1905 | ||
|description=CAGE_peak_6_at_SIX3_5end | |description=CAGE_peak_6_at_SIX3_5end | ||
Revision as of 10:24, 29 July 2015
| Short description: | p6@SIX3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_SIX3_5end |
| Coexpression cluster: | C1905_caudate_putamen_embryonic_pituitary_globus_cord_rhabdomyosarcoma |
| Association with transcript: | -46bp_to_NM_005413, uc002run.1_5end |
| EntrezGene: | 6496 |
| HGNC: | 10889 |
| UniProt: | O95343 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@SIX3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| crystallin accumulating cell | 1.23e-15 | 4 |
| vertebrate lens cell | 1.23e-15 | 4 |
| lens epithelial cell | 1.23e-15 | 4 |
| retinal pigment epithelial cell | 1.13e-12 | 3 |
| ciliated cell | 2.29e-12 | 3 |
| ciliated epithelial cell | 2.29e-12 | 3 |
| multi-ciliated epithelial cell | 2.29e-12 | 3 |
| non-pigmented ciliary epithelial cell | 2.29e-12 | 3 |
| columnar/cuboidal epithelial cell | 9.15e-10 | 27 |
| visual pigment cell | 1.31e-09 | 4 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| pigment epithelium of eye | 1.56e-40 | 11 |
| pre-chordal neural plate | 3.82e-39 | 61 |
| eye | 5.76e-38 | 21 |
| visual system | 5.76e-38 | 21 |
| camera-type eye | 6.96e-35 | 20 |
| simple eye | 6.96e-35 | 20 |
| immature eye | 6.96e-35 | 20 |
| ocular region | 6.96e-35 | 20 |
| eyeball of camera-type eye | 6.96e-35 | 20 |
| optic cup | 6.96e-35 | 20 |
Showing 1 to 10 of 89 entries
