FFCP PHASE1:Hg19::chr2:38296784..38296796,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:38296784..38296796,- to FFCP PHASE1:Hg19::chr2:38296784..38296796,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:38296784..38296796,- | |||
|coexpression_cluster_id=C667 | |||
|description=CAGE_peak_at_chr2:38296784..38296796,- | |||
|id=chr2:38296784..38296796,- | |||
|ontology_enrichment_celltype=CL:0002194!9.43e-14!63;CL:0000576!9.43e-14!63;CL:0000040!9.43e-14!63;CL:0000559!9.43e-14!63;CL:0002009!4.62e-13!65;CL:0002057!7.62e-12!42;CL:0000860!1.22e-11!45;CL:0000839!1.61e-11!70;CL:0000557!3.08e-11!71;CL:0000766!5.90e-10!76;CL:0002320!6.94e-08!365;CL:0000134!3.58e-07!358;CL:0000499!4.62e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.35e-22;33!CL:0002057;1.35e-22;33!CL:0000473;6.65e-19;39!CL:0000234;6.65e-19;39!CL:0000153;7.56e-16;9!CL:0000447;7.56e-16;9!CL:0000214;8.33e-13;3!CL:0000135;9.93e-13;3!CL:0002579;9.93e-13;3!CL:0000388;9.93e-13;3!CL:0000576;1.99e-11;48!CL:0000499;7.35e-11;28!CL:0000327;1.38e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.08e-20,48;CL:0000234,5.08e-20,48;CL:0000860,5.00e-19,42;CL:0002057,5.00e-19,42;CL:0000153,8.83e-16,9;CL:0000447,8.83e-16,9;CL:0002194,1.14e-15,59;CL:0000576,1.14e-15,59;CL:0000040,1.14e-15,59;CL:0000559,1.14e-15,59;CL:0002009,4.15e-15,61;CL:0000839,7.52e-14,66;CL:0000557,1.28e-13,67;CL:0000135,8.34e-13,3;CL:0000214,8.34e-13,3;CL:0000388,8.34e-13,3;CL:0002579,1.41e-12,3;CL:0000766,1.44e-12,72;CL:0000499,7.48e-11,28;CL:0000327,1.52e-09,15;CL:0000763,7.78e-08,108;CL:0000049,7.78e-08,108;CL:0000134,1.73e-07,354;CL:0002320,2.82e-07,361;CL:0002087,2.95e-07,115;CL:0002031,6.95e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;6.98e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!1.92e-11!101;UBERON:0001434!1.92e-11!101;UBERON:0003688!2.71e-10!6;UBERON:0002358!2.71e-10!6;UBERON:0003684!2.71e-10!6;UBERON:0001178!2.71e-10!6;UBERON:0004457!4.99e-10!12;UBERON:0000042!4.99e-10!12;UBERON:0002371!5.34e-10!80;UBERON:0001474!1.64e-09!86;UBERON:0002204!4.35e-09!167;UBERON:0002384!4.34e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.67e-24;9!UBERON:0000042;1.67e-24;9!UBERON:0003688;6.55e-14;6!UBERON:0002358;6.55e-14;6!UBERON:0003684;6.55e-14;6!UBERON:0001178;6.55e-14;6!UBERON:0006915;8.33e-13;3!UBERON:0007616;8.33e-13;3!UBERON:0002217;8.33e-13;3!UBERON:0002018;8.33e-13;3!UBERON:0007846;9.93e-13;3!UBERON:0000043;9.93e-13;3!UBERON:0007845;9.93e-13;3!UBERON:0002171;6.91e-10;1!UBERON:0006518;6.91e-10;1!UBERON:0008949;6.91e-10;1!UBERON:0000101;6.91e-10;1!UBERON:0002167;6.91e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,2.93e-18,12;UBERON:0000042,2.93e-18,12;UBERON:0001434,1.90e-14,100;UBERON:0002371,3.47e-14,76;UBERON:0003688,8.70e-14,6;UBERON:0002358,8.70e-14,6;UBERON:0003684,8.70e-14,6;UBERON:0001178,8.70e-14,6;UBERON:0001474,5.11e-13,82;UBERON:0007846,8.34e-13,3;UBERON:0006915,8.34e-13,3;UBERON:0007616,8.34e-13,3;UBERON:0000043,8.34e-13,3;UBERON:0007845,8.34e-13,3;UBERON:0002217,8.34e-13,3;UBERON:0002018,8.34e-13,3;UBERON:0004765,1.06e-11,90;UBERON:0002405,2.91e-11,93;UBERON:0002390,1.36e-10,98;UBERON:0003061,1.36e-10,98;UBERON:0002204,1.61e-10,167;UBERON:0002171,6.91e-10,1;UBERON:0006518,6.91e-10,1;UBERON:0008949,6.91e-10,1;UBERON:0000101,6.91e-10,1;UBERON:0002167,6.91e-10,1;UBERON:0002193,1.94e-09,108;UBERON:0002384,5.53e-07,371 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.563817616383885,3.00219895059391,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0.726991193897824,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,3.45230870786581,1.0246428261164,1.18241114944293,0,0,0,1.12945403725563,0,0,0.612167784741805,0.320929027076094,1.27867425159808,0.659702600373432,1.39624560335142,0,1.45104619314292,0,0,4.27122730936464,2.60741459210101,0.65156653411535,1.21079900526674,0.368277635987565,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,2.462390822334,0,0.973269740605272,0.945348171640679,0,0.527008714158756,0,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.300476117813194,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0.257640540045629,0,0,0.0974370051611986,0,0.0920498986422993,0,0.355009592516614,0,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.936017060556951,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,1.74306691720059,0.699810938274399,0,0,2.10833939483032,0.479249710983165,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0.460385919864187,0.561320188866147,0.640695746278505,1.02341449813341,4.50390979202101,0,0,0,0.164254312027618,0,0,0,0,0.184161977871793,0.229628896329213,0.182091168006717,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0,0.0852266274161009,0,0.330569830721956,0,0,0.30347334256665,0.464845549297286,0,0,0,0,0,0,0,0,0,0.953150969619124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0.6196469961995,0,0,0,0,0,2.53329162357197,2.30506425071931,0,0.349934720244983,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0.997896857164083,0,0,0,0.561594356226918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577901179803038,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0.851940108927109,0,0,0,0,0,0.342173675768659,0,0,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,1.50940741051545,0,0,0,0.15543720058278,0.147855149989634,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0.171488009437418,0,0.0657727735628491,0.118193840883968,0.222462803784138,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329821550236287,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0.743990036333503,4.62175628631418,1.29787968637137,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.54503513781167,0.428201047781966,0.563817616383885,3.00219895059391,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0.726991193897824,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,3.45230870786581,1.0246428261164,1.18241114944293,0,0,0,1.12945403725563,0,0,0.612167784741805,0.320929027076094,1.27867425159808,0.659702600373432,1.39624560335142,0,1.45104619314292,0,0,4.27122730936464,2.60741459210101,0.65156653411535,1.21079900526674,0.368277635987565,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,2.462390822334,0,0.973269740605272,0.945348171640679,0,0.527008714158756,0,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.300476117813194,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0.257640540045629,0,0,0.0974370051611986,0,0.0920498986422993,0,0.355009592516614,0,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.936017060556951,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,1.74306691720059,0.699810938274399,0,0,2.10833939483032,0.479249710983165,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0.460385919864187,0.561320188866147,0.640695746278505,1.02341449813341,4.50390979202101,0,0,0,0.164254312027618,0,0,0,0,0.184161977871793,0.229628896329213,0.182091168006717,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0,0.0852266274161009,0,0.330569830721956,0,0,0.30347334256665,0.464845549297286,0,0,0,0,0,0,0,0,0,0.953150969619124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0.6196469961995,0,0,0,0,0,2.53329162357197,2.30506425071931,0,0.349934720244983,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0.997896857164083,0,0,0,0.561594356226918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577901179803038,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0.851940108927109,0,0,0,0,0,0.342173675768659,0,0,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,1.50940741051545,0,0,0,0.15543720058278,0.147855149989634,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0.171488009437418,0,0.0657727735628491,0.118193840883968,0.222462803784138,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329821550236287,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0.743990036333503,4.62175628631418,1.29787968637137,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr2:38296784..38296796,- | |||
}} | }} |
Latest revision as of 09:57, 29 July 2015
Short description: | p@chr2:38296784..38296796, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:38296784..38296796, - |
Coexpression cluster: | C667_CD14_tenocyte_Synoviocyte_Smooth_dura_Preadipocyte_Macrophage |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.08e-20 | 48 |
phagocyte | 5.08e-20 | 48 |
classical monocyte | 5.00e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.00e-19 | 42 |
GAG secreting cell | 8.83e-16 | 9 |
carbohydrate secreting cell | 8.83e-16 | 9 |
monopoietic cell | 1.14e-15 | 59 |
monocyte | 1.14e-15 | 59 |
monoblast | 1.14e-15 | 59 |
promonocyte | 1.14e-15 | 59 |
macrophage dendritic cell progenitor | 4.15e-15 | 61 |
myeloid lineage restricted progenitor cell | 7.52e-14 | 66 |
granulocyte monocyte progenitor cell | 1.28e-13 | 67 |
fibrocyte | 8.34e-13 | 3 |
synovial cell | 8.34e-13 | 3 |
tendon cell | 8.34e-13 | 3 |
omentum preadipocyte | 1.41e-12 | 3 |
myeloid leukocyte | 1.44e-12 | 72 |
stromal cell | 7.48e-11 | 28 |
extracellular matrix secreting cell | 1.52e-09 | 15 |
myeloid cell | 7.78e-08 | 108 |
common myeloid progenitor | 7.78e-08 | 108 |
mesenchymal cell | 1.73e-07 | 354 |
connective tissue cell | 2.82e-07 | 361 |
nongranular leukocyte | 2.95e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 6.95e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 2.93e-18 | 12 |
serous membrane | 2.93e-18 | 12 |
skeletal system | 1.90e-14 | 100 |
bone marrow | 3.47e-14 | 76 |
omentum | 8.70e-14 | 6 |
peritoneum | 8.70e-14 | 6 |
abdominal cavity | 8.70e-14 | 6 |
visceral peritoneum | 8.70e-14 | 6 |
bone element | 5.11e-13 | 82 |
dense regular connective tissue | 8.34e-13 | 3 |
stratified squamous epithelium | 8.34e-13 | 3 |
layer of synovial tissue | 8.34e-13 | 3 |
tendon | 8.34e-13 | 3 |
regular connective tissue | 8.34e-13 | 3 |
synovial joint | 8.34e-13 | 3 |
synovial membrane of synovial joint | 8.34e-13 | 3 |
skeletal element | 1.06e-11 | 90 |
immune system | 2.91e-11 | 93 |
hematopoietic system | 1.36e-10 | 98 |
blood island | 1.36e-10 | 98 |
musculoskeletal system | 1.61e-10 | 167 |
lower lobe of right lung | 6.91e-10 | 1 |
right lung lobe | 6.91e-10 | 1 |
lower lobe of lung | 6.91e-10 | 1 |
lobe of lung | 6.91e-10 | 1 |
right lung | 6.91e-10 | 1 |
hemolymphoid system | 1.94e-09 | 108 |
connective tissue | 5.53e-07 | 371 |