FFCP PHASE1:Hg19::chr2:29353224..29353251,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:29353224..29353251,- to FFCP PHASE1:Hg19::chr2:29353224..29353251,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:29353224..29353251,- | |||
|coexpression_cluster_id=C619 | |||
|description=CAGE_peak_at_chr2:29353224..29353251,- | |||
|id=chr2:29353224..29353251,- | |||
|ontology_enrichment_celltype=CL:0002057!5.79e-16!42;CL:0000860!6.95e-16!45;CL:0000839!6.15e-11!70;CL:0002194!1.67e-10!63;CL:0000576!1.67e-10!63;CL:0000040!1.67e-10!63;CL:0000559!1.67e-10!63;CL:0002009!8.17e-10!65;CL:0000063!2.61e-09!578;CL:0000557!2.62e-09!71;CL:0000548!2.82e-09!679;CL:0000004!2.82e-09!679;CL:0000255!2.82e-09!679;CL:0000012!5.84e-09!682;CL:0000766!6.30e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.75e-56;33!CL:0002057;6.75e-56;33!CL:0000473;1.87e-37;39!CL:0000234;1.87e-37;39!CL:0000576;1.15e-24;48!CL:0000766;1.05e-13;69!CL:0002087;4.03e-08;104!CL:0000763;2.56e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.47e-47,42;CL:0002057,3.47e-47,42;CL:0000473,1.30e-40,48;CL:0000234,1.30e-40,48;CL:0002194,2.08e-31,59;CL:0000576,2.08e-31,59;CL:0000040,2.08e-31,59;CL:0000559,2.08e-31,59;CL:0002009,3.20e-30,61;CL:0000839,1.45e-27,66;CL:0000557,4.42e-27,67;CL:0000766,7.38e-25,72;CL:0000763,6.66e-15,108;CL:0000049,6.66e-15,108;CL:0002087,1.09e-13,115;CL:0002031,6.52e-13,120;CL:0000738,8.27e-11,136;CL:0002032,2.25e-08,161;CL:0000837,2.25e-08,161;CL:0000037,7.95e-08,168;CL:0000988,3.45e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.93e-33;42 | |||
|ontology_enrichment_disease=DOID:305!2.97e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!1.18e-07!101;UBERON:0001434!1.18e-07!101;UBERON:0002371!5.62e-07!80;UBERON:0001474!9.48e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.74e-23,76;UBERON:0001474,3.21e-21,82;UBERON:0004765,6.88e-19,90;UBERON:0002405,4.06e-18,93;UBERON:0002390,6.16e-17,98;UBERON:0003061,6.16e-17,98;UBERON:0001434,1.69e-16,100;UBERON:0002193,6.66e-15,108;UBERON:0002204,7.93e-09,167 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.495065411840187,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0.152826811495903,0.164201178899891,0.236132343941038,0,0,0,0,0,1.10926203050036,0,0.568676929949686,0,0,0,0,0,0,0,0.145398238779565,1.13362783106643,0,0.929716147622738,0.411167888021826,1.85823822537062,3.16461631554365,2.81776777182011,3.31075121844019,2.06847408441971,3.22742341791913,5.41705946377367,0.564727018627814,2.18324920046277,2.24723484445085,2.14258724659632,5.1348644332175,1.27867425159808,0.989553900560148,0.598390972864896,0.426224750532694,2.90209238628584,3.40431134814684,1.86846674698672,3.26623264833766,3.12889751052121,3.25783267057675,3.02699751316684,9.20694089968912,7.27863491114034,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0,0,0.486634870302636,0.189069634328136,0,0,0.0654895377488563,0.364295288292542,0,0,0.174129737299267,0,0,0,0,0.79504962946682,0,0.347140501607594,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0.760272105718513,0,0,0.81014194788176,0,0,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.877955241761676,0.919463387397059,0.150238058906597,0,0.717558542755448,0,0.635795703478686,0.900273288253207,0.515262646192195,0,0,0.168776332241266,0.0974370051611986,0.757301322732344,0.368199594569197,0.484938170456436,1.06502877754984,0.403008392910561,0.508681776931463,0.386521706326594,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.402115889646523,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0.0895585227028483,0.290633938513962,0,0.985326475791887,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0.415941723061614,0.178428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0.306923946576125,0.280660094433074,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.246381468041427,0,0.116210378459959,0,0,0,0.114814448164607,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0.183138929636687,0,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0,0.214840489736547,0,0.170453254832202,0.178064071293475,0,0.192190067365106,0.510450849978337,0,0,0,0.6970372701606,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0.202182481573316,0,0,0.48763373908959,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,1.41904425628239,0,0,0,0,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.20453736500431,0.123084805461069,0,0.0898683511473268,3.22238114416096,0,0.394573622547734,0,0,0,0,0,0.260427761085233,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0.370691816839509,0,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.661983911750998,0.941798755221676,0,1.99226682220855,0,0.347119476670262,0.587954384486266,0.870592065804026,0.34945333648406,0.343972064943233,0.0967563312890851,0.219267951258557,0,0.0969890164884194,0,0,0,0.596143835108969,0,0,1.28254112402454,0,0,0,0,0.171594997861965,0.288109595976299,1.24252535565433,0,0.271808412147228,0.104602846312333,0.815985741090574,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16540459332447,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.472834243795189,0.157363764404994,0,2.33073541132698,0.383830394638891,0,0,0.25426853765475,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0,0,0.513260513652988,2.81926008926669,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.785270481251171,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.228840068396924,0,0.15543720058278,0.295710299979268,0.477890301491107,0.449803112163605,0.310525913752519,0.414706207840855,0,0,0,0,0.406870733204662,0.363697318405119,0.322231671127465,0,0,0,0.343395705182793,0,0,0.192619830407303,0,0.521988583930423,0.680117776536817,0.463044948647668,0.244736704506468,0.358177682162975,0.308801447160972,0,0,0.192914038270915,0.506827321959218,3.58738126023125,1.72715170865599,0.303859956177382,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0.6124909547064,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0.687034029507179,2.47736419030255,0.183428598521679,0,0.381382095467167,0.690359926060101,0,0.0752103283492573,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,1.20041606606193,0,0,1.18193840883968,0,0.078493092850514,0,0.280272163313789,0,1.07963795609311,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0.93061915699296,2.8666168169323,0.335566295393377,0,1.09726132484042,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0,41.1638211115433,0,0,0,0,0,0,0,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0.509177266225319,0.404234377916439,0,0,0,0.0717222053926763,0,0,0.213454691755431,0,0.0898252021065869,0,0,0,0.665756774185513,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.495065411840187,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0.152826811495903,0.164201178899891,0.236132343941038,0,0,0,0,0,1.10926203050036,0,0.568676929949686,0,0,0,0,0,0,0,0.145398238779565,1.13362783106643,0,0.929716147622738,0.411167888021826,1.85823822537062,3.16461631554365,2.81776777182011,3.31075121844019,2.06847408441971,3.22742341791913,5.41705946377367,0.564727018627814,2.18324920046277,2.24723484445085,2.14258724659632,5.1348644332175,1.27867425159808,0.989553900560148,0.598390972864896,0.426224750532694,2.90209238628584,3.40431134814684,1.86846674698672,3.26623264833766,3.12889751052121,3.25783267057675,3.02699751316684,9.20694089968912,7.27863491114034,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0,0,0.486634870302636,0.189069634328136,0,0,0.0654895377488563,0.364295288292542,0,0,0.174129737299267,0,0,0,0,0.79504962946682,0,0.347140501607594,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0.760272105718513,0,0,0.81014194788176,0,0,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.877955241761676,0.919463387397059,0.150238058906597,0,0.717558542755448,0,0.635795703478686,0.900273288253207,0.515262646192195,0,0,0.168776332241266,0.0974370051611986,0.757301322732344,0.368199594569197,0.484938170456436,1.06502877754984,0.403008392910561,0.508681776931463,0.386521706326594,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.402115889646523,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0.0895585227028483,0.290633938513962,0,0.985326475791887,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0.415941723061614,0.178428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0.306923946576125,0.280660094433074,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.246381468041427,0,0.116210378459959,0,0,0,0.114814448164607,0.364182336013434,0.262248829918848,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0,0,0.183138929636687,0,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0,0.214840489736547,0,0.170453254832202,0.178064071293475,0,0.192190067365106,0.510450849978337,0,0,0,0.6970372701606,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0.202182481573316,0,0,0.48763373908959,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,1.41904425628239,0,0,0,0,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.20453736500431,0.123084805461069,0,0.0898683511473268,3.22238114416096,0,0.394573622547734,0,0,0,0,0,0.260427761085233,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0.370691816839509,0,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.661983911750998,0.941798755221676,0,1.99226682220855,0,0.347119476670262,0.587954384486266,0.870592065804026,0.34945333648406,0.343972064943233,0.0967563312890851,0.219267951258557,0,0.0969890164884194,0,0,0,0.596143835108969,0,0,1.28254112402454,0,0,0,0,0.171594997861965,0.288109595976299,1.24252535565433,0,0.271808412147228,0.104602846312333,0.815985741090574,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16540459332447,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.472834243795189,0.157363764404994,0,2.33073541132698,0.383830394638891,0,0,0.25426853765475,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0,0,0.513260513652988,2.81926008926669,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.785270481251171,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0,0,0,0.228840068396924,0,0.15543720058278,0.295710299979268,0.477890301491107,0.449803112163605,0.310525913752519,0.414706207840855,0,0,0,0,0.406870733204662,0.363697318405119,0.322231671127465,0,0,0,0.343395705182793,0,0,0.192619830407303,0,0.521988583930423,0.680117776536817,0.463044948647668,0.244736704506468,0.358177682162975,0.308801447160972,0,0,0.192914038270915,0.506827321959218,3.58738126023125,1.72715170865599,0.303859956177382,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0.6124909547064,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0.687034029507179,2.47736419030255,0.183428598521679,0,0.381382095467167,0.690359926060101,0,0.0752103283492573,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,1.20041606606193,0,0,1.18193840883968,0,0.078493092850514,0,0.280272163313789,0,1.07963795609311,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0.93061915699296,2.8666168169323,0.335566295393377,0,1.09726132484042,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0,41.1638211115433,0,0,0,0,0,0,0,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0.509177266225319,0.404234377916439,0,0,0,0.0717222053926763,0,0,0.213454691755431,0,0.0898252021065869,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr2:29353224..29353251,- | |||
}} | }} |
Latest revision as of 09:27, 29 July 2015
Short description: | p@chr2:29353224..29353251, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:29353224..29353251, - |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.47e-47 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.47e-47 | 42 |
defensive cell | 1.30e-40 | 48 |
phagocyte | 1.30e-40 | 48 |
monopoietic cell | 2.08e-31 | 59 |
monocyte | 2.08e-31 | 59 |
monoblast | 2.08e-31 | 59 |
promonocyte | 2.08e-31 | 59 |
macrophage dendritic cell progenitor | 3.20e-30 | 61 |
myeloid lineage restricted progenitor cell | 1.45e-27 | 66 |
granulocyte monocyte progenitor cell | 4.42e-27 | 67 |
myeloid leukocyte | 7.38e-25 | 72 |
myeloid cell | 6.66e-15 | 108 |
common myeloid progenitor | 6.66e-15 | 108 |
nongranular leukocyte | 1.09e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 6.52e-13 | 120 |
leukocyte | 8.27e-11 | 136 |
hematopoietic oligopotent progenitor cell | 2.25e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-08 | 161 |
hematopoietic stem cell | 7.95e-08 | 168 |
hematopoietic cell | 3.45e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.74e-23 | 76 |
bone element | 3.21e-21 | 82 |
skeletal element | 6.88e-19 | 90 |
immune system | 4.06e-18 | 93 |
hematopoietic system | 6.16e-17 | 98 |
blood island | 6.16e-17 | 98 |
skeletal system | 1.69e-16 | 100 |
hemolymphoid system | 6.66e-15 | 108 |
musculoskeletal system | 7.93e-09 | 167 |