FFCP PHASE1:Hg19::chr2:28524175..28524215,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:28524175..28524215,+ | |||
|description=CAGE_peak_at_chr2:28524175..28524215,+ | |description=CAGE_peak_at_chr2:28524175..28524215,+ | ||
|id=chr2:28524175..28524215,+ | |id=chr2:28524175..28524215,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002559;5.93e-16;5!CL:0002622;6.29e-16;3!CL:0002504;9.35e-16;3!CL:1000279;9.35e-16;3!CL:1000280;9.35e-16;3!CL:0002561;5.60e-11;2!CL:0002195;7.72e-11;2!CL:0002571;7.72e-11;2!CL:0000346;2.19e-07;3!CL:1000428;2.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002559,4.81e-16,5;CL:0002622,5.17e-16,3;CL:0002504,8.49e-16,3;CL:1000279,8.49e-16,3;CL:1000280,8.49e-16,3;CL:0002561,6.05e-11,2;CL:0002195,8.53e-11,2;CL:0002571,8.53e-11,2;CL:0000346,1.75e-07,3;CL:1000428,1.75e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3307;8.31e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,5.21e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0002200!7.51e-07!11;UBERON:0006876!7.51e-07!11;UBERON:0000059!9.33e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000059;5.25e-21;11!UBERON:0001155;5.44e-19;9!UBERON:0000160;2.27e-16;17!UBERON:0002073;5.93e-16;5!UBERON:0005409;1.56e-12;22!UBERON:0005933;5.60e-11;2!UBERON:0005942;5.60e-11;2!UBERON:0005932;5.60e-11;2!UBERON:0004921;4.68e-10;33!UBERON:0001003;5.10e-08;15!UBERON:0007376;5.10e-08;15!UBERON:0002367;1.35e-07;11!UBERON:0010147;1.35e-07;11!UBERON:0000412;2.19e-07;3!UBERON:0001992;2.19e-07;3!UBERON:0003937;5.81e-07;12!UBERON:0005399;5.81e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000059,5.68e-21,11;UBERON:0001155,6.20e-19,9;UBERON:0000160,2.40e-16,17;UBERON:0002073,4.81e-16,5;UBERON:0005086,4.81e-16,5;UBERON:0005933,6.05e-11,2;UBERON:0005942,6.05e-11,2;UBERON:0005932,6.05e-11,2;UBERON:0005409,6.36e-11,25;UBERON:0001046,5.46e-09,19;UBERON:0001003,4.59e-08,15;UBERON:0007376,4.59e-08,15;UBERON:0007383,4.59e-08,15;UBERON:0003104,1.17e-07,160;UBERON:0009142,1.17e-07,160;UBERON:0002367,1.28e-07,11;UBERON:0010147,1.28e-07,11;UBERON:0009846,1.28e-07,11;UBERON:0003353,1.28e-07,11;UBERON:0004902,1.28e-07,11;UBERON:0003820,1.28e-07,11;UBERON:0009847,1.28e-07,11;UBERON:0000412,1.75e-07,3;UBERON:0001992,1.75e-07,3;UBERON:0003937,5.51e-07,12;UBERON:0005399,5.51e-07,12;UBERON:0001007,7.66e-07,145;UBERON:0001555,7.66e-07,145;UBERON:0007026,7.66e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,2.09305798730539,0,0.940364164434263,0,0.273748850145768,0,0,0.164201178899891,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0,0,0,1.03988298880475,0.221729397462564,0.263504357079378,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.756787138224657,1.15235184896,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.245668634623536,1.03325781175765,0,1.23633464639278,0,0,0.673344455816265,0,0.277064115484183,0.877955241761676,0,0.600952235626387,0,0.179389635688862,1.49490172172997,0,0,0.309157587715317,0.257640540045629,0.18611685633159,0,0.194874010322397,0,0.460249493211497,0.161646056818812,0,0,0.339121184620975,0,0,0,0.121973706129595,0,0,0,0,0,1.56449532329816,3.85944562915731,0,3.71494342425583,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,1.44331342025273,0.579652024875384,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0,0,0.12624243342638,0.190493682876507,0,0,0,0.102827492703324,0,0.857479297891735,0.112131084345361,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,1.04007436911366,0,0,0,2.28764789853036,1.08524321078289,0,0,2.13235169245527,1.58390374586686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.173767228936166,0.391602314925481,0.343143423810856,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24813458209045,2.91345868810747,8.78533580228142,0,0.0770153371044148,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0,0,0.206082023295445,0.54941678891006,0.165018999841176,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0,0.0852266274161009,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,0,1.33441135746677,0.767693373934002,2.1396949401696,0,0,4.49681143958287,2.74537029736055,3.18093486333353,0,0,0.421258456238981,1.46290121726877,0,0,0.9554993798559,8.20151505331534,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0,0.0711418433484141,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0.33307196799782,0,0.18714054040822,0.146508179271894,0,0.111443384277478,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0,1.10513566212459,0,16.1584518353405,0.246169610922139,0,0,0,0,0.887790650732402,0,0,0,0,0,0.260427761085233,0,0,0,0,0.709163045303809,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.384751292518985,0,0.23056390438806,0.0897576444097721,0,0,0.641183153813036,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0.995261931078505,1.06149077404007,2.4441205797345,0,0,0,0,0,0,0,0.19566461893209,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0.569219092059585,0,0.173559738335131,0,0,0,0,0.0967563312890851,0,0.0821154570532092,0.387956065953678,0,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0.418411385249333,2.24396078799908,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0,0,0.201550417460179,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,0.1251909307065,0,0,0,0,0,0,3.99651466962954,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0.345430341731199,0,0.276516872303462,0.194860308839388,0,0.163565394255844,0.655219697692825,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23211132428821,9.49360979794921,0,0,0.159633859057151,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0.150420656698515,0.20170506870352,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0.266107110487916,0,0,0.135939465953663,0,0.118193840883968,0,0.156986185701028,0.157115589916002,0,4.56579360254748,0,0.47775168788705,0,0,0,0,6.41369091784202,0.207216164163037,0,0,0,0,0.0852134047591577,0.423387050190929,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0,0,0,0.150962843566674,0.154348316215889,0.655678681511872,0,1.71603825227734,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0.730336388246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| ||
|short_description=p@chr2:28524175..28524215,+ | |short_description=p@chr2:28524175..28524215,+ | ||
}} | }} |
Latest revision as of 09:19, 29 July 2015
Short description: | p@chr2:28524175..28524215, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28524175..28524215, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle cell | 4.81e-16 | 5 |
prostate stromal cell | 5.17e-16 | 3 |
enteric smooth muscle cell | 8.49e-16 | 3 |
smooth muscle cell of large intestine | 8.49e-16 | 3 |
smooth muscle cell of colon | 8.49e-16 | 3 |
outer root sheath cell | 6.05e-11 | 2 |
hepatic stem cell | 8.53e-11 | 2 |
hepatic mesenchymal stem cell | 8.53e-11 | 2 |
hair follicle dermal papilla cell | 1.75e-07 | 3 |
stem cell of epidermis | 1.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
large intestine | 5.68e-21 | 11 |
colon | 6.20e-19 | 9 |
intestine | 2.40e-16 | 17 |
hair follicle | 4.81e-16 | 5 |
hair follicle placode | 4.81e-16 | 5 |
hair root sheath | 6.05e-11 | 2 |
hair outer root sheath | 6.05e-11 | 2 |
bulb of hair follicle | 6.05e-11 | 2 |
gastrointestinal system | 6.36e-11 | 25 |
hindgut | 5.46e-09 | 19 |
skin epidermis | 4.59e-08 | 15 |
outer epithelium | 4.59e-08 | 15 |
enveloping layer of ectoderm | 4.59e-08 | 15 |
mesenchyme | 1.17e-07 | 160 |
entire embryonic mesenchyme | 1.17e-07 | 160 |
prostate gland | 1.28e-07 | 11 |
male accessory sex gland | 1.28e-07 | 11 |
embryonic cloacal epithelium | 1.28e-07 | 11 |
epithelium of hindgut | 1.28e-07 | 11 |
urogenital sinus epithelium | 1.28e-07 | 11 |
prostate bud | 1.28e-07 | 11 |
prostate field | 1.28e-07 | 11 |
dermal papilla | 1.75e-07 | 3 |
papillary layer of dermis | 1.75e-07 | 3 |
sex gland | 5.51e-07 | 12 |
male reproductive gland | 5.51e-07 | 12 |
digestive system | 7.66e-07 | 145 |
digestive tract | 7.66e-07 | 145 |
primitive gut | 7.66e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
teratoma | 5.21e-11 | 2 |