FFCP PHASE1:Hg19::chr2:232030447..232030460,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:232030447..232030460,+ | |||
|coexpression_cluster_id=C136 | |coexpression_cluster_id=C136 | ||
|description=CAGE_peak_at_chr2:232030447..232030460,+ | |description=CAGE_peak_at_chr2:232030447..232030460,+ | ||
|id=chr2:232030447..232030460,+ | |id=chr2:232030447..232030460,+ | ||
|ontology_enrichment_celltype=CL:0002334!2.37e-13!12;CL:0002586!3.96e-12!3;CL:0002580!4.29e-11!3;CL:0000149!3.39e-09!4 | |ontology_enrichment_celltype=CL:0002334!2.37e-13!12;CL:0002586!3.96e-12!3;CL:0002580!4.29e-11!3;CL:0000149!3.39e-09!4 | ||
|ontology_enrichment_celltype_v019=CL:0002586;6.43e-23;3!CL:0002568;3.44e-18;1!CL:0000511;1.12e-17;1!CL:0002625;1.12e-17;1!CL:0000216;1.12e-17;1!CL:0000149;1.86e-17;4!CL:0002504;6.32e-07;3!CL:1000279;6.32e-07;3!CL:1000280;6.32e-07;3!CL:0002166;7.49e-07;3!CL:0002622;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.15e-23,3;CL:0002568,3.16e-18,1;CL:0000511,1.03e-17,1;CL:0002625,1.03e-17,1;CL:0000216,1.03e-17,1;CL:0000149,1.57e-17,4;CL:0002504,6.50e-07,3;CL:1000279,6.50e-07,3;CL:1000280,6.50e-07,3;CL:0002166,7.28e-07,3;CL:0002622,9.64e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.27e-08!14 | |ontology_enrichment_disease=DOID:2394!1.27e-08!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001781!3.96e-12!3;UBERON:0001782!3.96e-12!3;UBERON:0005424!3.96e-12!3;UBERON:0007625!2.77e-08!11;UBERON:0000966!1.99e-07!5;UBERON:0005388!1.99e-07!5;UBERON:0001802!1.99e-07!5 | |ontology_enrichment_uberon=UBERON:0001781!3.96e-12!3;UBERON:0001782!3.96e-12!3;UBERON:0005424!3.96e-12!3;UBERON:0007625!2.77e-08!11;UBERON:0000966!1.99e-07!5;UBERON:0005388!1.99e-07!5;UBERON:0001802!1.99e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;6.43e-23;3!UBERON:0001782;6.43e-23;3!UBERON:0001136;1.12e-17;1!UBERON:0001343;1.12e-17;1!UBERON:0004910;1.12e-17;1!UBERON:0004813;1.12e-17;1!UBERON:0000966;3.60e-14;5!UBERON:0005388;3.60e-14;5!UBERON:0001802;3.60e-14;5!UBERON:0004909;1.64e-09;2!UBERON:0007625;6.16e-07;11!UBERON:0001896;9.37e-07;3!UBERON:0005290;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,5.15e-23,3;UBERON:0005424,5.15e-23,3;UBERON:0001136,1.03e-17,1;UBERON:0001343,1.03e-17,1;UBERON:0004910,1.03e-17,1;UBERON:0005154,1.03e-17,1;UBERON:0005295,1.03e-17,1;UBERON:0004813,1.03e-17,1;UBERON:0005297,1.03e-17,1;UBERON:0005294,1.03e-17,1;UBERON:0010141,1.03e-17,1;UBERON:0005891,1.03e-17,1;UBERON:0001781,1.57e-17,4;UBERON:0000966,5.08e-12,6;UBERON:0005388,5.08e-12,6;UBERON:0001802,5.08e-12,6;UBERON:0004909,1.57e-09,2;UBERON:0007625,5.81e-07,11 | |||
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| ||
|short_description=p@chr2:232030447..232030460,+ | |short_description=p@chr2:232030447..232030460,+ | ||
}} | }} |
Latest revision as of 07:36, 29 July 2015
Short description: | p@chr2:232030447..232030460, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:232030447..232030460, + |
Coexpression cluster: | C136_Wilms_extraskeletal_anaplastic_rhabdomyosarcoma_cholangiocellular_nonsmall_neuroectodermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.15e-23 | 3 |
mesenchymal stem cell of Wharton's jelly | 3.16e-18 | 1 |
androgen binding protein secreting cell | 1.03e-17 | 1 |
seminiferous tubule epithelial cell | 1.03e-17 | 1 |
Sertoli cell | 1.03e-17 | 1 |
visual pigment cell | 1.57e-17 | 4 |
enteric smooth muscle cell | 6.50e-07 | 3 |
smooth muscle cell of large intestine | 6.50e-07 | 3 |
smooth muscle cell of colon | 6.50e-07 | 3 |
epithelial cell of Malassez | 7.28e-07 | 3 |
prostate stromal cell | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 5.15e-23 | 3 |
presumptive retinal pigmented epithelium | 5.15e-23 | 3 |
mesothelium | 1.03e-17 | 1 |
seminiferous tubule of testis | 1.03e-17 | 1 |
epithelium of male gonad | 1.03e-17 | 1 |
epithelial cord | 1.03e-17 | 1 |
sex cord | 1.03e-17 | 1 |
seminiferous tubule epithelium | 1.03e-17 | 1 |
testis sex cord | 1.03e-17 | 1 |
genital ridge | 1.03e-17 | 1 |
primitive sex cord of indifferent gonad | 1.03e-17 | 1 |
coelomic epithelium | 1.03e-17 | 1 |
layer of retina | 1.57e-17 | 4 |
retina | 5.08e-12 | 6 |
photoreceptor array | 5.08e-12 | 6 |
posterior segment of eyeball | 5.08e-12 | 6 |
epithelium of gonad | 1.57e-09 | 2 |
pigment epithelium of eye | 5.81e-07 | 11 |