FFCP PHASE1:Hg19::chr2:20405127..20405142,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20405127..20405142,- | |||
|coexpression_cluster_id=C572 | |coexpression_cluster_id=C572 | ||
|description=CAGE_peak_at_chr2:20405127..20405142,- | |description=CAGE_peak_at_chr2:20405127..20405142,- | ||
|id=chr2:20405127..20405142,- | |id=chr2:20405127..20405142,- | ||
|ontology_enrichment_celltype=CL:0000223!6.25e-16!59;CL:0002076!9.50e-16!43;CL:0000066!5.48e-12!254;CL:0002368!1.69e-10!13;CL:0000220!5.83e-09!246;CL:0002321!9.47e-09!248;CL:0002159!2.43e-08!13;CL:0000244!6.45e-07!4;CL:0000731!6.45e-07!4 | |ontology_enrichment_celltype=CL:0000223!6.25e-16!59;CL:0002076!9.50e-16!43;CL:0000066!5.48e-12!254;CL:0002368!1.69e-10!13;CL:0000220!5.83e-09!246;CL:0002321!9.47e-09!248;CL:0002159!2.43e-08!13;CL:0000244!6.45e-07!4;CL:0000731!6.45e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002328;1.24e-24;3!CL:0002368;2.36e-21;13!CL:0000244;4.52e-18;4!CL:0000731;4.52e-18;4!CL:0002076;8.37e-17;42!CL:0000312;1.02e-14;5!CL:0002202;1.68e-14;9!CL:0002632;1.68e-14;9!CL:0000240;2.35e-12;6!CL:0000311;2.35e-12;6!CL:0000079;2.35e-12;6!CL:0000237;2.35e-12;6!CL:0002231;1.93e-11;3!CL:0002621;4.19e-11;3!CL:0002159;4.29e-09;14!CL:0002591;5.97e-09;1!CL:0000362;2.12e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,1.02e-24,3;CL:0002368,2.94e-21,13;CL:0002076,2.07e-20,42;CL:0000223,4.79e-20,58;CL:0000244,2.19e-18,4;CL:0000731,2.19e-18,4;CL:0000312,8.33e-15,5;CL:0002202,1.62e-14,9;CL:0002632,1.62e-14,9;CL:0000240,1.98e-12,6;CL:0000311,1.98e-12,6;CL:0000079,1.98e-12,6;CL:0000237,1.98e-12,6;CL:0000036,1.98e-12,6;CL:0000357,1.98e-12,6;CL:0000114,1.98e-12,6;CL:0002231,2.26e-11,3;CL:0002621,5.43e-11,3;CL:0000066,8.50e-10,253;CL:0002159,3.26e-09,14;CL:0002591,1.07e-08,1;CL:0000362,1.89e-08,9;CL:0002321,1.46e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000357;2.35e-12;6!CL:0000114;2.35e-12;6!CL:0000223;6.35e-11;58!UBERON:0009143;5.97e-09;1!UBERON:0006242;5.97e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.12e-19!169;UBERON:0000925!1.12e-19!169;UBERON:0006595!1.12e-19!169;UBERON:0003102!5.25e-14!95;UBERON:0000161!9.75e-13!35;UBERON:0001007!1.74e-12!155;UBERON:0001555!1.74e-12!155;UBERON:0007026!1.74e-12!155;UBERON:0001004!2.41e-12!72;UBERON:0000077!2.49e-11!130;UBERON:0000166!4.66e-11!21;UBERON:0005911!5.21e-10!82;UBERON:0004921!4.54e-09!129;UBERON:0004185!4.54e-09!129;UBERON:0000165!1.59e-08!28;UBERON:0000930!1.59e-08!28;UBERON:0001041!4.36e-08!98;UBERON:0000365!9.91e-08!5;UBERON:0000065!1.40e-07!53;UBERON:0000475!1.98e-07!365;UBERON:0000466!3.62e-07!126;UBERON:0003104!5.80e-07!238;UBERON:0009142!5.80e-07!238 | |ontology_enrichment_uberon=UBERON:0004119!1.12e-19!169;UBERON:0000925!1.12e-19!169;UBERON:0006595!1.12e-19!169;UBERON:0003102!5.25e-14!95;UBERON:0000161!9.75e-13!35;UBERON:0001007!1.74e-12!155;UBERON:0001555!1.74e-12!155;UBERON:0007026!1.74e-12!155;UBERON:0001004!2.41e-12!72;UBERON:0000077!2.49e-11!130;UBERON:0000166!4.66e-11!21;UBERON:0005911!5.21e-10!82;UBERON:0004921!4.54e-09!129;UBERON:0004185!4.54e-09!129;UBERON:0000165!1.59e-08!28;UBERON:0000930!1.59e-08!28;UBERON:0001041!4.36e-08!98;UBERON:0000365!9.91e-08!5;UBERON:0000065!1.40e-07!53;UBERON:0000475!1.98e-07!365;UBERON:0000466!3.62e-07!126;UBERON:0003104!5.80e-07!238;UBERON:0009142!5.80e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.24e-24;3!UBERON:0002031;1.24e-24;3!UBERON:0000486;6.60e-16;12!UBERON:0002185;5.08e-15;5!UBERON:0005911;6.02e-15;36!UBERON:0000365;1.42e-14;5!UBERON:0005910;3.08e-12;6!UBERON:0010371;3.47e-11;31!UBERON:0001949;4.19e-11;3!UBERON:0000485;7.04e-11;7!UBERON:0004807;9.23e-09;22!UBERON:0007196;9.35e-09;15!UBERON:0001558;9.35e-09;15!UBERON:0001003;1.70e-08;15!UBERON:0007376;1.70e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.02e-24,3;UBERON:0002031,1.02e-24,3;UBERON:0005911,7.38e-16,82;UBERON:0004119,1.56e-15,160;UBERON:0000925,1.56e-15,160;UBERON:0006595,1.56e-15,160;UBERON:0002185,4.53e-15,5;UBERON:0000365,7.95e-15,5;UBERON:0000485,3.34e-14,9;UBERON:0005910,1.91e-12,6;UBERON:0001949,5.43e-11,3;UBERON:0004807,1.74e-09,28;UBERON:0001004,8.76e-09,74;UBERON:0007196,9.18e-09,15;UBERON:0001558,9.18e-09,15;UBERON:0001003,1.61e-08,15;UBERON:0007376,1.61e-08,15;UBERON:0007383,1.61e-08,15;UBERON:0003929,6.79e-08,54;UBERON:0001007,9.44e-08,145;UBERON:0001555,9.44e-08,145;UBERON:0007026,9.44e-08,145;UBERON:0003102,1.60e-07,99;UBERON:0005157,2.23e-07,47 | |||
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| ||
|short_description=p@chr2:20405127..20405142,- | |short_description=p@chr2:20405127..20405142,- | ||
}} | }} |
Latest revision as of 05:13, 29 July 2015
Short description: | p@chr2:20405127..20405142, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20405127..20405142, - |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 1.02e-24 | 3 |
respiratory epithelial cell | 2.94e-21 | 13 |
endo-epithelial cell | 2.07e-20 | 42 |
endodermal cell | 4.79e-20 | 58 |
transitional epithelial cell | 2.19e-18 | 4 |
urothelial cell | 2.19e-18 | 4 |
keratinocyte | 8.33e-15 | 5 |
epithelial cell of tracheobronchial tree | 1.62e-14 | 9 |
epithelial cell of lower respiratory tract | 1.62e-14 | 9 |
stratified squamous epithelial cell | 1.98e-12 | 6 |
keratin accumulating cell | 1.98e-12 | 6 |
stratified epithelial cell | 1.98e-12 | 6 |
keratinizing barrier epithelial cell | 1.98e-12 | 6 |
epithelial fate stem cell | 1.98e-12 | 6 |
stratified epithelial stem cell | 1.98e-12 | 6 |
surface ectodermal cell | 1.98e-12 | 6 |
epithelial cell of prostate | 2.26e-11 | 3 |
gingival epithelial cell | 5.43e-11 | 3 |
epithelial cell | 8.50e-10 | 253 |
general ecto-epithelial cell | 3.26e-09 | 14 |
smooth muscle cell of the pulmonary artery | 1.07e-08 | 1 |
epidermal cell | 1.89e-08 | 9 |
embryonic cell | 1.46e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.02e-24 | 3 |
epithelium of bronchus | 1.02e-24 | 3 |
endo-epithelium | 7.38e-16 | 82 |
endoderm-derived structure | 1.56e-15 | 160 |
endoderm | 1.56e-15 | 160 |
presumptive endoderm | 1.56e-15 | 160 |
bronchus | 4.53e-15 | 5 |
urothelium | 7.95e-15 | 5 |
simple columnar epithelium | 3.34e-14 | 9 |
transitional epithelium | 1.91e-12 | 6 |
gingival epithelium | 5.43e-11 | 3 |
respiratory system epithelium | 1.74e-09 | 28 |
respiratory system | 8.76e-09 | 74 |
tracheobronchial tree | 9.18e-09 | 15 |
lower respiratory tract | 9.18e-09 | 15 |
skin epidermis | 1.61e-08 | 15 |
outer epithelium | 1.61e-08 | 15 |
enveloping layer of ectoderm | 1.61e-08 | 15 |
gut epithelium | 6.79e-08 | 54 |
digestive system | 9.44e-08 | 145 |
digestive tract | 9.44e-08 | 145 |
primitive gut | 9.44e-08 | 145 |
surface structure | 1.60e-07 | 99 |
epithelial fold | 2.23e-07 | 47 |