FFCP PHASE1:Hg19::chr2:191709136..191709144,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:191709136..191709144,- | |||
|coexpression_cluster_id=C601 | |coexpression_cluster_id=C601 | ||
|description=CAGE_peak_at_chr2:191709136..191709144,- | |description=CAGE_peak_at_chr2:191709136..191709144,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002149!2.11e-16!6;CL:0002255!2.11e-16!6;CL:0002537!2.26e-11!5;CL:0000453!3.94e-11!5;CL:0002166!6.92e-09!3;CL:0000322!8.09e-09!3;CL:0002076!1.58e-07!43;CL:0000319!2.10e-07!1 | |ontology_enrichment_celltype=CL:0002149!2.11e-16!6;CL:0002255!2.11e-16!6;CL:0002537!2.26e-11!5;CL:0000453!3.94e-11!5;CL:0002166!6.92e-09!3;CL:0000322!8.09e-09!3;CL:0002076!1.58e-07!43;CL:0000319!2.10e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002149;4.85e-23;6!CL:0002255;4.85e-23;6!CL:0000322;2.59e-12;3!CL:0000453;6.55e-08;5!CL:0002537;6.55e-08;5!CL:0002076;4.48e-07;42 | |ontology_enrichment_celltype_v019=CL:0002149;4.85e-23;6!CL:0002255;4.85e-23;6!CL:0000322;2.59e-12;3!CL:0000453;6.55e-08;5!CL:0002537;6.55e-08;5!CL:0002076;4.48e-07;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0002149,3.88e-23,6;CL:0002255,3.88e-23,6;CL:0000322,2.89e-12,3;CL:0002537,6.55e-08,5;CL:0000453,7.49e-08,5;CL:0002076,7.58e-08,42 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:3001!2.11e-16!6;DOID:3910!8.49e-13!2;DOID:299!4.60e-08!25;DOID:3030!2.10e-07!1 | |ontology_enrichment_disease=DOID:3001!2.11e-16!6;DOID:3910!8.49e-13!2;DOID:299!4.60e-08!25;DOID:3030!2.10e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3001;4.85e-23;6!DOID:3910;9.07e-18;2!DOID:3908;6.55e-08;5 | |ontology_enrichment_disease_v019=DOID:3001;4.85e-23;6!DOID:3910;9.07e-18;2!DOID:3908;6.55e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:3001,3.88e-23,6;DOID:3910,1.07e-17,2;DOID:3908,7.01e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0004903!8.49e-13!2;UBERON:0002173!8.49e-13!2;UBERON:0002186!8.49e-13!2;UBERON:0004821!8.09e-09!3;UBERON:0003215!8.09e-09!3;UBERON:0002299!8.09e-09!3;UBERON:0006524!8.09e-09!3;UBERON:0008874!8.09e-09!3;UBERON:0002169!8.09e-09!3;UBERON:0004894!8.09e-09!3;UBERON:0000305!3.00e-08!7;UBERON:0004871!2.87e-07!8;UBERON:0000997!7.29e-07!1;UBERON:0005056!7.29e-07!1;UBERON:0001708!7.31e-07!4;UBERON:0001704!7.31e-07!4 | |ontology_enrichment_uberon=UBERON:0004903!8.49e-13!2;UBERON:0002173!8.49e-13!2;UBERON:0002186!8.49e-13!2;UBERON:0004821!8.09e-09!3;UBERON:0003215!8.09e-09!3;UBERON:0002299!8.09e-09!3;UBERON:0006524!8.09e-09!3;UBERON:0008874!8.09e-09!3;UBERON:0002169!8.09e-09!3;UBERON:0004894!8.09e-09!3;UBERON:0000305!3.00e-08!7;UBERON:0004871!2.87e-07!8;UBERON:0000997!7.29e-07!1;UBERON:0005056!7.29e-07!1;UBERON:0001708!7.31e-07!4;UBERON:0001704!7.31e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;9.07e-18;2!UBERON:0002173;9.07e-18;2!UBERON:0002186;9.07e-18;2!UBERON:0004821;2.59e-12;3!UBERON:0007499;2.59e-12;3!UBERON:0003215;2.59e-12;3!UBERON:0010368;2.59e-12;3!UBERON:0009911;2.59e-12;3!UBERON:0002299;2.59e-12;3!UBERON:0006524;2.59e-12;3!UBERON:0008874;2.59e-12;3!UBERON:0002169;2.59e-12;3!UBERON:0004894;2.59e-12;3!UBERON:0009856;1.44e-09;4!UBERON:0000995;8.23e-09;17!UBERON:0003975;2.25e-08;18!UBERON:0004175;2.60e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0004903;9.07e-18;2!UBERON:0002173;9.07e-18;2!UBERON:0002186;9.07e-18;2!UBERON:0004821;2.59e-12;3!UBERON:0007499;2.59e-12;3!UBERON:0003215;2.59e-12;3!UBERON:0010368;2.59e-12;3!UBERON:0009911;2.59e-12;3!UBERON:0002299;2.59e-12;3!UBERON:0006524;2.59e-12;3!UBERON:0008874;2.59e-12;3!UBERON:0002169;2.59e-12;3!UBERON:0004894;2.59e-12;3!UBERON:0009856;1.44e-09;4!UBERON:0000995;8.23e-09;17!UBERON:0003975;2.25e-08;18!UBERON:0004175;2.60e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.07e-17,2;UBERON:0002173,1.07e-17,2;UBERON:0002186,1.07e-17,2;UBERON:0004821,2.89e-12,3;UBERON:0003215,2.89e-12,3;UBERON:0010368,2.89e-12,3;UBERON:0009911,2.89e-12,3;UBERON:0002299,2.89e-12,3;UBERON:0006524,2.89e-12,3;UBERON:0008874,2.89e-12,3;UBERON:0002169,2.89e-12,3;UBERON:0004894,2.89e-12,3;UBERON:0000995,2.44e-07,21;UBERON:0005795,4.79e-07,22;UBERON:0003975,4.79e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,1.19372242368845,0.593929361665277,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,1.20258735531594,0,0,0,0,0,8.25367683486399,0,0,0.195984794828755,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0.168942440653073,0,0.345430341731199,0,0,0,1.0629187225069,0.490696182767533,0,0.983091635014877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,1.24082554265728,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,1.19372242368845,0.593929361665277,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,1.20258735531594,0,0,0,0,0,8.25367683486399,0,0,0.195984794828755,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0.168942440653073,0,0.345430341731199,0,0,0,1.0629187225069,0.490696182767533,0,0.983091635014877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,1.24082554265728,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:191709136..191709144,- | |short_description=p@chr2:191709136..191709144,- | ||
}} | }} |
Latest revision as of 04:25, 29 July 2015
Short description: | p@chr2:191709136..191709144, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:191709136..191709144, - |
Coexpression cluster: | C601_endometrial_clear_thyroid_kidney_Renal_serous_endometrioid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 3.88e-23 | 6 |
stromal cell of endometrium | 3.88e-23 | 6 |
pneumocyte | 2.89e-12 | 3 |
amnion mesenchymal stem cell | 6.55e-08 | 5 |
Langerhans cell | 7.49e-08 | 5 |
endo-epithelial cell | 7.58e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.07e-17 | 2 |
alveolar duct | 1.07e-17 | 2 |
bronchiole | 1.07e-17 | 2 |
pulmonary alveolus epithelium | 2.89e-12 | 3 |
alveolus | 2.89e-12 | 3 |
pulmonary lobule | 2.89e-12 | 3 |
lobule | 2.89e-12 | 3 |
alveolus of lung | 2.89e-12 | 3 |
alveolar system | 2.89e-12 | 3 |
pulmonary acinus | 2.89e-12 | 3 |
alveolar sac | 2.89e-12 | 3 |
alveolar wall | 2.89e-12 | 3 |
uterus | 2.44e-07 | 21 |
embryonic uterus | 4.79e-07 | 22 |
internal female genitalia | 4.79e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 3.88e-23 | 6 |
lung adenocarcinoma | 1.07e-17 | 2 |
non-small cell lung carcinoma | 7.01e-08 | 5 |