FFCP PHASE1:Hg19::chr2:113587636..113587648,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:113587636..113587648,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr2:113587636..113587648,- | |description=CAGE_peak_at_chr2:113587636..113587648,- | ||
|id=chr2:113587636..113587648,- | |id=chr2:113587636..113587648,- | ||
|ontology_enrichment_celltype=CL:0002057!1.72e-42!42;CL:0000860!5.84e-39!45;CL:0002009!1.21e-30!65;CL:0002194!5.54e-30!63;CL:0000576!5.54e-30!63;CL:0000040!5.54e-30!63;CL:0000559!5.54e-30!63;CL:0000557!3.73e-27!71;CL:0000766!2.24e-26!76;CL:0000839!5.99e-26!70;CL:0000763!1.38e-17!112;CL:0000049!1.38e-17!112;CL:0000359!9.31e-16!32;CL:0002087!5.29e-14!119;CL:0000738!9.21e-14!140;CL:0002031!3.18e-11!124;CL:0000192!7.90e-11!42;CL:0000514!7.90e-11!42;CL:0000037!1.79e-10!172;CL:0000566!1.79e-10!172;CL:0002595!2.69e-10!5;CL:0000988!2.70e-09!182;CL:0000034!1.03e-08!444;CL:0000723!1.17e-08!436;CL:0002032!1.46e-08!165;CL:0000837!1.46e-08!165;CL:0000187!2.62e-08!54;CL:0000048!4.38e-08!430;CL:0000680!1.26e-07!57;CL:0000056!1.26e-07!57;CL:0000355!1.26e-07!57;CL:0002371!1.92e-07!591;CL:0000183!3.27e-07!59;CL:0000393!5.13e-07!60;CL:0000211!5.13e-07!60;CL:0002592!5.63e-07!3;CL:0000144!8.63e-07!625 | |ontology_enrichment_celltype=CL:0002057!1.72e-42!42;CL:0000860!5.84e-39!45;CL:0002009!1.21e-30!65;CL:0002194!5.54e-30!63;CL:0000576!5.54e-30!63;CL:0000040!5.54e-30!63;CL:0000559!5.54e-30!63;CL:0000557!3.73e-27!71;CL:0000766!2.24e-26!76;CL:0000839!5.99e-26!70;CL:0000763!1.38e-17!112;CL:0000049!1.38e-17!112;CL:0000359!9.31e-16!32;CL:0002087!5.29e-14!119;CL:0000738!9.21e-14!140;CL:0002031!3.18e-11!124;CL:0000192!7.90e-11!42;CL:0000514!7.90e-11!42;CL:0000037!1.79e-10!172;CL:0000566!1.79e-10!172;CL:0002595!2.69e-10!5;CL:0000988!2.70e-09!182;CL:0000034!1.03e-08!444;CL:0000723!1.17e-08!436;CL:0002032!1.46e-08!165;CL:0000837!1.46e-08!165;CL:0000187!2.62e-08!54;CL:0000048!4.38e-08!430;CL:0000680!1.26e-07!57;CL:0000056!1.26e-07!57;CL:0000355!1.26e-07!57;CL:0002371!1.92e-07!591;CL:0000183!3.27e-07!59;CL:0000393!5.13e-07!60;CL:0000211!5.13e-07!60;CL:0002592!5.63e-07!3;CL:0000144!8.63e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.45e-75;33!CL:0002057;9.45e-75;33!CL:0000473;8.94e-52;39!CL:0000234;8.94e-52;39!CL:0000576;6.92e-41;48!CL:0000766;6.84e-29;69!CL:0002087;2.60e-13;104!CL:0002593;4.18e-12;2!CL:0000763;1.94e-11;100!CL:0002393;3.13e-09;6!CL:0002397;3.13e-09;6!CL:0000738;1.18e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.08e-82,42;CL:0002057,5.08e-82,42;CL:0000473,3.90e-71,48;CL:0000234,3.90e-71,48;CL:0002194,1.57e-60,59;CL:0000576,1.57e-60,59;CL:0000040,1.57e-60,59;CL:0000559,1.57e-60,59;CL:0002009,2.08e-58,61;CL:0000839,1.17e-53,66;CL:0000557,8.58e-53,67;CL:0000766,8.12e-49,72;CL:0002087,3.39e-31,115;CL:0000763,6.05e-31,108;CL:0000049,6.05e-31,108;CL:0002031,2.40e-27,120;CL:0000738,1.41e-25,136;CL:0000037,1.08e-19,168;CL:0002032,4.55e-19,161;CL:0000837,4.55e-19,161;CL:0000988,2.03e-18,177;CL:0002593,4.82e-12,2;CL:0000034,6.61e-10,441;CL:0000048,1.63e-09,427;CL:0000723,2.71e-09,433;CL:0000134,7.12e-09,354;CL:0002320,1.38e-08,361;CL:0000219,1.42e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-60;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;8.67e-07;1!DOID:3165;8.67e-07;1!DOID:0060121;8.67e-07;1!DOID:2438;8.67e-07;1!DOID:4418;8.67e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,9.73e-07,1;DOID:3165,9.73e-07,1;DOID:0060121,9.73e-07,1;DOID:2438,9.73e-07,1;DOID:4418,9.73e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002204!9.77e-24!167;UBERON:0002371!6.56e-23!80;UBERON:0001474!4.84e-22!86;UBERON:0002390!1.91e-20!102;UBERON:0003061!1.91e-20!102;UBERON:0003081!2.77e-19!216;UBERON:0002193!1.16e-18!112;UBERON:0004765!2.82e-18!101;UBERON:0001434!2.82e-18!101;UBERON:0002405!1.28e-14!115;UBERON:0004573!9.23e-12!33;UBERON:0004571!9.23e-12!33;UBERON:0001637!7.90e-11!42;UBERON:0003509!7.90e-11!42;UBERON:0004572!7.90e-11!42;UBERON:0003834!2.69e-10!5;UBERON:0001533!2.69e-10!5;UBERON:0003513!8.61e-09!8;UBERON:0001981!3.85e-07!60;UBERON:0007500!3.85e-07!60;UBERON:0004537!3.85e-07!60;UBERON:0006965!3.85e-07!60;UBERON:0001621!5.63e-07!3;UBERON:0000926!7.12e-07!448;UBERON:0004120!7.12e-07!448;UBERON:0006603!7.12e-07!448;UBERON:0001134!7.92e-07!61;UBERON:0002036!7.92e-07!61;UBERON:0003082!7.92e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;4.18e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.23e-46,76;UBERON:0001474,2.67e-42,82;UBERON:0004765,4.07e-38,90;UBERON:0002390,1.74e-37,98;UBERON:0003061,1.74e-37,98;UBERON:0002405,9.90e-37,93;UBERON:0001434,8.12e-34,100;UBERON:0002193,1.50e-33,108;UBERON:0002204,2.26e-25,167;UBERON:0003081,6.83e-25,203;UBERON:0000926,4.08e-15,315;UBERON:0004120,4.08e-15,315;UBERON:0006603,4.08e-15,315;UBERON:0002456,4.82e-12,2;UBERON:0002384,3.41e-08,371 | |||
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|short_description=p@chr2:113587636..113587648,- | |short_description=p@chr2:113587636..113587648,- | ||
}} | }} |
Latest revision as of 23:24, 28 July 2015
Short description: | p@chr2:113587636..113587648, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:113587636..113587648, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.08e-82 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.08e-82 | 42 |
defensive cell | 3.90e-71 | 48 |
phagocyte | 3.90e-71 | 48 |
monopoietic cell | 1.57e-60 | 59 |
monocyte | 1.57e-60 | 59 |
monoblast | 1.57e-60 | 59 |
promonocyte | 1.57e-60 | 59 |
macrophage dendritic cell progenitor | 2.08e-58 | 61 |
myeloid lineage restricted progenitor cell | 1.17e-53 | 66 |
granulocyte monocyte progenitor cell | 8.58e-53 | 67 |
myeloid leukocyte | 8.12e-49 | 72 |
nongranular leukocyte | 3.39e-31 | 115 |
myeloid cell | 6.05e-31 | 108 |
common myeloid progenitor | 6.05e-31 | 108 |
hematopoietic lineage restricted progenitor cell | 2.40e-27 | 120 |
leukocyte | 1.41e-25 | 136 |
hematopoietic stem cell | 1.08e-19 | 168 |
hematopoietic oligopotent progenitor cell | 4.55e-19 | 161 |
hematopoietic multipotent progenitor cell | 4.55e-19 | 161 |
hematopoietic cell | 2.03e-18 | 177 |
smooth muscle cell of the internal thoracic artery | 4.82e-12 | 2 |
stem cell | 6.61e-10 | 441 |
multi fate stem cell | 1.63e-09 | 427 |
somatic stem cell | 2.71e-09 | 433 |
mesenchymal cell | 7.12e-09 | 354 |
connective tissue cell | 1.38e-08 | 361 |
motile cell | 1.42e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.23e-46 | 76 |
bone element | 2.67e-42 | 82 |
skeletal element | 4.07e-38 | 90 |
hematopoietic system | 1.74e-37 | 98 |
blood island | 1.74e-37 | 98 |
immune system | 9.90e-37 | 93 |
skeletal system | 8.12e-34 | 100 |
hemolymphoid system | 1.50e-33 | 108 |
musculoskeletal system | 2.26e-25 | 167 |
lateral plate mesoderm | 6.83e-25 | 203 |
mesoderm | 4.08e-15 | 315 |
mesoderm-derived structure | 4.08e-15 | 315 |
presumptive mesoderm | 4.08e-15 | 315 |
internal thoracic artery | 4.82e-12 | 2 |
connective tissue | 3.41e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 9.73e-07 | 1 |
skin benign neoplasm | 9.73e-07 | 1 |
integumentary system benign neoplasm | 9.73e-07 | 1 |
dermis tumor | 9.73e-07 | 1 |
cutaneous fibrous histiocytoma | 9.73e-07 | 1 |