FFCP PHASE1:Hg19::chr2:104490735..104490784,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000537492_5end | |association_with_transcript=0bp_to_ENST00000537492_5end | ||
|cluster_id=chr2:104490735..104490784,+ | |||
|coexpression_cluster_id=C545 | |||
|description=CAGE_peak_1_at_ENST00000537492_5end | |description=CAGE_peak_1_at_ENST00000537492_5end | ||
|id=chr2:104490735..104490784,+ | |id=chr2:104490735..104490784,+ | ||
|ontology_enrichment_celltype=CL:0002605!8.77e-27!3;CL:0000047!1.15e-26!8;CL:0000064!5.10e-25!3;CL:0005012!5.10e-25!3;CL:0000067!5.10e-25!3;CL:0002304!5.10e-25!3;CL:0002319!2.21e-19!25;CL:0000133!5.37e-15!59;CL:0000540!1.87e-13!6;CL:0000031!1.87e-13!6;CL:0000404!1.87e-13!6;CL:0000221!3.12e-12!71;CL:0000128!8.21e-12!7;CL:0000126!8.21e-12!7;CL:0000127!8.21e-12!7;CL:0002453!8.21e-12!7 | |ontology_enrichment_celltype=CL:0002605!8.77e-27!3;CL:0000047!1.15e-26!8;CL:0000064!5.10e-25!3;CL:0005012!5.10e-25!3;CL:0000067!5.10e-25!3;CL:0002304!5.10e-25!3;CL:0002319!2.21e-19!25;CL:0000133!5.37e-15!59;CL:0000540!1.87e-13!6;CL:0000031!1.87e-13!6;CL:0000404!1.87e-13!6;CL:0000221!3.12e-12!71;CL:0000128!8.21e-12!7;CL:0000126!8.21e-12!7;CL:0000127!8.21e-12!7;CL:0002453!8.21e-12!7 | ||
|ontology_enrichment_celltype_v019=CL:0002605;2.94e-41;3!CL:0002319;5.04e-31;25!CL:0000047;1.14e-27;2!CL:0000540;1.25e-20;6!CL:0000404;1.25e-20;6!CL:0000128;4.17e-18;7!CL:0000126;4.17e-18;7!CL:0000127;4.17e-18;7!CL:0000243;8.65e-08;15!CL:0000125;8.65e-08;15!CL:0000095;5.08e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.46e-41,8;CL:0002605,2.94e-41,3;CL:0002319,4.94e-31,25;CL:0000540,1.25e-20,6;CL:0000031,1.25e-20,6;CL:0000404,1.25e-20,6;CL:0000128,4.17e-18,7;CL:0000126,4.17e-18,7;CL:0000127,4.17e-18,7;CL:0002453,4.17e-18,7;CL:0000133,8.03e-17,59;CL:0000221,1.05e-13,72;CL:0000243,8.65e-08,15;CL:0000125,8.65e-08,15;CL:0000030,8.65e-08,15;CL:0000339,8.65e-08,15;CL:0000095,5.08e-07,17;CL:0000123,5.08e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;1.25e-20;6!CL:0000133;5.33e-12;59!CL:0000339;8.65e-08;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002046!3.87e-26!5;UBERON:0004117!3.87e-26!5;UBERON:0007689!3.87e-26!5;UBERON:0007123!3.87e-26!5;UBERON:0003091!3.87e-26!5;UBERON:0001778!5.10e-25!3;UBERON:0001775!5.10e-25!3;UBERON:0000488!6.21e-19!4;UBERON:0002203!7.99e-13!6;UBERON:0001768!7.99e-13!6;UBERON:0001017!1.36e-12!82;UBERON:0007625!4.30e-12!11;UBERON:0009722!4.98e-12!11;UBERON:0007690!4.98e-12!11;UBERON:0003056!5.61e-12!61;UBERON:0005743!6.33e-12!86;UBERON:0000956!1.90e-11!25;UBERON:0000203!1.90e-11!25;UBERON:0000073!1.26e-10!94;UBERON:0001016!1.26e-10!94;UBERON:0004121!9.87e-10!169;UBERON:0001801!1.53e-09!14;UBERON:0000924!1.91e-09!173;UBERON:0006601!1.91e-09!173;UBERON:0001869!6.52e-09!32;UBERON:0008814!7.17e-09!15;UBERON:0002791!1.23e-08!33;UBERON:0002020!2.25e-08!34;UBERON:0003528!2.25e-08!34;UBERON:0001893!2.25e-08!34;UBERON:0003075!4.37e-08!86;UBERON:0007284!4.37e-08!86;UBERON:0002346!1.16e-07!90;UBERON:0002200!3.17e-07!11;UBERON:0006876!3.17e-07!11;UBERON:0000153!3.61e-07!129;UBERON:0007811!3.61e-07!129;UBERON:0000019!4.54e-07!19;UBERON:0000047!4.54e-07!19;UBERON:0004088!4.54e-07!19;UBERON:0003072!4.54e-07!19;UBERON:0003071!4.54e-07!19;UBERON:0004128!4.54e-07!19;UBERON:0002780!6.84e-07!41;UBERON:0001890!6.84e-07!41;UBERON:0006240!6.84e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;2.94e-18;25!UBERON:0000203;2.94e-18;25!UBERON:0002791;5.03e-14;32!UBERON:0001869;6.16e-14;32!UBERON:0003528;4.16e-13;34!UBERON:0002020;4.16e-13;34!UBERON:0001893;4.28e-12;34!UBERON:0002780;2.43e-09;41!UBERON:0001890;2.43e-09;41!UBERON:0000341;8.60e-08;2!UBERON:0000922;8.74e-08;49!UBERON:0001016;1.32e-07;83!UBERON:0000955;2.74e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.31e-22,81;UBERON:0001016,1.68e-19,89;UBERON:0000956,2.99e-18,25;UBERON:0000203,2.99e-18,25;UBERON:0002791,2.51e-14,32;UBERON:0001869,2.51e-14,32;UBERON:0003528,1.71e-13,34;UBERON:0002020,1.71e-13,34;UBERON:0001893,1.71e-13,34;UBERON:0004121,1.85e-11,171;UBERON:0000924,1.85e-11,171;UBERON:0006601,1.85e-11,171;UBERON:0002780,3.40e-11,41;UBERON:0001890,3.40e-11,41;UBERON:0003080,3.40e-11,41;UBERON:0006240,3.40e-11,41;UBERON:0003056,5.36e-10,61;UBERON:0000955,8.56e-09,68;UBERON:0006238,8.56e-09,68;UBERON:0000073,1.24e-08,53;UBERON:0002616,1.24e-08,53;UBERON:0011216,2.01e-08,223;UBERON:0001049,3.67e-08,56;UBERON:0005068,3.67e-08,56;UBERON:0006241,3.67e-08,56;UBERON:0007135,3.67e-08,56;UBERON:0000341,9.19e-08,2;UBERON:0003075,2.56e-07,82;UBERON:0007284,2.56e-07,82;UBERON:0002346,5.92e-07,86 | |||
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|short_description=p1@ENST00000537492 | |short_description=p1@ENST00000537492 | ||
}} | }} |
Latest revision as of 22:54, 28 July 2015
Short description: | p1@ENST00000537492 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000537492_5end |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | 0bp_to_ENST00000537492_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.46e-41 | 8 |
astrocyte of the cerebral cortex | 2.94e-41 | 3 |
neural cell | 4.94e-31 | 25 |
neuron | 1.25e-20 | 6 |
neuroblast | 1.25e-20 | 6 |
electrically signaling cell | 1.25e-20 | 6 |
oligodendrocyte | 4.17e-18 | 7 |
macroglial cell | 4.17e-18 | 7 |
astrocyte | 4.17e-18 | 7 |
oligodendrocyte precursor cell | 4.17e-18 | 7 |
neurectodermal cell | 8.03e-17 | 59 |
ectodermal cell | 1.05e-13 | 72 |
glial cell (sensu Vertebrata) | 8.65e-08 | 15 |
glial cell | 8.65e-08 | 15 |
glioblast | 8.65e-08 | 15 |
glioblast (sensu Vertebrata) | 8.65e-08 | 15 |
neuron associated cell | 5.08e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.08e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.31e-22 | 81 |
nervous system | 1.68e-19 | 89 |
cerebral cortex | 2.99e-18 | 25 |
pallium | 2.99e-18 | 25 |
regional part of telencephalon | 2.51e-14 | 32 |
cerebral hemisphere | 2.51e-14 | 32 |
brain grey matter | 1.71e-13 | 34 |
gray matter | 1.71e-13 | 34 |
telencephalon | 1.71e-13 | 34 |
ectoderm-derived structure | 1.85e-11 | 171 |
ectoderm | 1.85e-11 | 171 |
presumptive ectoderm | 1.85e-11 | 171 |
regional part of forebrain | 3.40e-11 | 41 |
forebrain | 3.40e-11 | 41 |
anterior neural tube | 3.40e-11 | 41 |
future forebrain | 3.40e-11 | 41 |
pre-chordal neural plate | 5.36e-10 | 61 |
brain | 8.56e-09 | 68 |
future brain | 8.56e-09 | 68 |
regional part of nervous system | 1.24e-08 | 53 |
regional part of brain | 1.24e-08 | 53 |
organ system subdivision | 2.01e-08 | 223 |
neural tube | 3.67e-08 | 56 |
neural rod | 3.67e-08 | 56 |
future spinal cord | 3.67e-08 | 56 |
neural keel | 3.67e-08 | 56 |
throat | 9.19e-08 | 2 |
neural plate | 2.56e-07 | 82 |
presumptive neural plate | 2.56e-07 | 82 |
neurectoderm | 5.92e-07 | 86 |