FFCP PHASE1:Hg19::chr22:30653384..30653392,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr22:30653384..30653392,- | |||
|coexpression_cluster_id=C1262 | |coexpression_cluster_id=C1262 | ||
|description=CAGE_peak_at_chr22:30653384..30653392,- | |description=CAGE_peak_at_chr22:30653384..30653392,- | ||
|id=chr22:30653384..30653392,- | |id=chr22:30653384..30653392,- | ||
|ontology_enrichment_celltype=CL:0000066!2.72e-20!254;CL:1000497!5.64e-20!18;CL:0002518!5.64e-20!18;CL:1000507!1.51e-17!12;CL:1000494!1.51e-17!12;CL:1000449!1.78e-15!16;CL:0002681!2.34e-12!13;CL:0002584!2.34e-12!13;CL:0002149!6.01e-12!6;CL:0002255!6.01e-12!6;CL:0000239!4.03e-09!3;CL:1000615!4.03e-09!3;CL:0002306!4.03e-09!3 | |ontology_enrichment_celltype=CL:0000066!2.72e-20!254;CL:1000497!5.64e-20!18;CL:0002518!5.64e-20!18;CL:1000507!1.51e-17!12;CL:1000494!1.51e-17!12;CL:1000449!1.78e-15!16;CL:0002681!2.34e-12!13;CL:0002584!2.34e-12!13;CL:0002149!6.01e-12!6;CL:0002255!6.01e-12!6;CL:0000239!4.03e-09!3;CL:1000615!4.03e-09!3;CL:0002306!4.03e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.18e-13;1!CL:1000600;1.18e-13;1!CL:1000497;4.58e-12;17!CL:0002518;4.58e-12;17!CL:1000507;8.73e-12;10!CL:1000494;8.73e-12;10!CL:0002149;3.71e-09;6!CL:0002255;3.71e-09;6!CL:1000449;4.88e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,1.83e-13,1;CL:1000600,1.83e-13,1;CL:1000497,4.33e-12,17;CL:0002518,4.33e-12,17;CL:1000507,8.12e-12,10;CL:1000494,8.12e-12,10;CL:0002149,3.71e-09,6;CL:0002255,3.71e-09,6;CL:1000449,4.65e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.04e-28!106;DOID:0050687!1.06e-27!143;DOID:162!2.12e-19!235;DOID:14566!1.02e-18!239;DOID:299!1.88e-13!25;DOID:3001!6.01e-12!6;DOID:3908!2.86e-09!5;DOID:7!5.07e-08!39;DOID:0050686!2.91e-07!137;DOID:4468!4.75e-07!2;DOID:120!7.64e-07!27 | |ontology_enrichment_disease=DOID:305!5.04e-28!106;DOID:0050687!1.06e-27!143;DOID:162!2.12e-19!235;DOID:14566!1.02e-18!239;DOID:299!1.88e-13!25;DOID:3001!6.01e-12!6;DOID:3908!2.86e-09!5;DOID:7!5.07e-08!39;DOID:0050686!2.91e-07!137;DOID:4468!4.75e-07!2;DOID:120!7.64e-07!27 | ||
|ontology_enrichment_disease_v019=DOID:4468;7.19e-26;2!DOID:3111;5.15e-14;1!DOID:3603;5.15e-14;1!DOID:299;1.66e-12;25!DOID:3001;3.71e-09;6!DOID:4929;9.86e-08;2!DOID:120;1.35e-07;27!DOID:193;4.39e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,7.67e-26,2;DOID:3111,5.85e-14,1;DOID:3603,5.85e-14,1;DOID:299,1.55e-12,25;DOID:3001,3.71e-09,6;DOID:4929,9.87e-08,2;DOID:120,1.36e-07,27;DOID:193,4.43e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000058!5.06e-23!26;UBERON:0002113!4.51e-19!27;UBERON:0003918!4.51e-19!27;UBERON:0005095!4.51e-19!27;UBERON:0007687!4.51e-19!27;UBERON:0000489!6.64e-18!32;UBERON:0009773!1.51e-17!12;UBERON:0001231!1.51e-17!12;UBERON:0004810!1.51e-17!12;UBERON:0005177!1.63e-17!107;UBERON:0004211!1.78e-15!16;UBERON:0001285!1.78e-15!16;UBERON:0007684!1.78e-15!16;UBERON:0003220!1.78e-15!16;UBERON:0004208!1.78e-15!16;UBERON:0006554!2.51e-15!44;UBERON:0001008!7.01e-15!45;UBERON:0006555!1.97e-14!17;UBERON:0005103!1.97e-14!17;UBERON:0000083!1.97e-14!17;UBERON:0009201!1.97e-14!17;UBERON:0004819!1.97e-14!17;UBERON:0006553!1.97e-14!17;UBERON:0003074!1.97e-14!17;UBERON:0003060!1.97e-14!17;UBERON:0000080!1.66e-13!18;UBERON:0002120!1.66e-13!18;UBERON:0004875!1.66e-13!18;UBERON:0005721!1.66e-13!18;UBERON:0005754!1.66e-13!18;UBERON:0007297!1.66e-13!18;UBERON:0000466!1.13e-12!126;UBERON:0003886!1.39e-12!63;UBERON:0005172!1.41e-12!55;UBERON:0005173!1.41e-12!55;UBERON:0001225!2.34e-12!13;UBERON:0008987!2.34e-12!13;UBERON:0001851!2.52e-12!16;UBERON:0004876!6.22e-12!20;UBERON:0000353!2.62e-11!17;UBERON:0003887!2.93e-11!21;UBERON:0000464!3.35e-11!104;UBERON:0003064!3.41e-11!37;UBERON:0002417!7.20e-11!61;UBERON:0000916!7.20e-11!61;UBERON:0002394!7.91e-11!4;UBERON:0003928!7.91e-11!4;UBERON:0002553!8.36e-11!70;UBERON:0002114!3.51e-10!12;UBERON:0001264!5.42e-10!10;UBERON:0003922!5.42e-10!10;UBERON:0003923!5.42e-10!10;UBERON:0003924!5.42e-10!10;UBERON:0003921!5.42e-10!10;UBERON:0003104!1.14e-09!238;UBERON:0009142!1.14e-09!238;UBERON:0002294!2.84e-09!7;UBERON:0001173!2.84e-09!7;UBERON:0004912!2.84e-09!7;UBERON:0006853!4.03e-09!3;UBERON:0007685!4.03e-09!3;UBERON:0004134!4.03e-09!3;UBERON:0001045!5.26e-09!11;UBERON:0002075!6.03e-09!18;UBERON:0002108!1.17e-08!14;UBERON:0009569!2.70e-08!113;UBERON:0002100!3.46e-08!216;UBERON:0003103!3.99e-07!69 | |ontology_enrichment_uberon=UBERON:0000058!5.06e-23!26;UBERON:0002113!4.51e-19!27;UBERON:0003918!4.51e-19!27;UBERON:0005095!4.51e-19!27;UBERON:0007687!4.51e-19!27;UBERON:0000489!6.64e-18!32;UBERON:0009773!1.51e-17!12;UBERON:0001231!1.51e-17!12;UBERON:0004810!1.51e-17!12;UBERON:0005177!1.63e-17!107;UBERON:0004211!1.78e-15!16;UBERON:0001285!1.78e-15!16;UBERON:0007684!1.78e-15!16;UBERON:0003220!1.78e-15!16;UBERON:0004208!1.78e-15!16;UBERON:0006554!2.51e-15!44;UBERON:0001008!7.01e-15!45;UBERON:0006555!1.97e-14!17;UBERON:0005103!1.97e-14!17;UBERON:0000083!1.97e-14!17;UBERON:0009201!1.97e-14!17;UBERON:0004819!1.97e-14!17;UBERON:0006553!1.97e-14!17;UBERON:0003074!1.97e-14!17;UBERON:0003060!1.97e-14!17;UBERON:0000080!1.66e-13!18;UBERON:0002120!1.66e-13!18;UBERON:0004875!1.66e-13!18;UBERON:0005721!1.66e-13!18;UBERON:0005754!1.66e-13!18;UBERON:0007297!1.66e-13!18;UBERON:0000466!1.13e-12!126;UBERON:0003886!1.39e-12!63;UBERON:0005172!1.41e-12!55;UBERON:0005173!1.41e-12!55;UBERON:0001225!2.34e-12!13;UBERON:0008987!2.34e-12!13;UBERON:0001851!2.52e-12!16;UBERON:0004876!6.22e-12!20;UBERON:0000353!2.62e-11!17;UBERON:0003887!2.93e-11!21;UBERON:0000464!3.35e-11!104;UBERON:0003064!3.41e-11!37;UBERON:0002417!7.20e-11!61;UBERON:0000916!7.20e-11!61;UBERON:0002394!7.91e-11!4;UBERON:0003928!7.91e-11!4;UBERON:0002553!8.36e-11!70;UBERON:0002114!3.51e-10!12;UBERON:0001264!5.42e-10!10;UBERON:0003922!5.42e-10!10;UBERON:0003923!5.42e-10!10;UBERON:0003924!5.42e-10!10;UBERON:0003921!5.42e-10!10;UBERON:0003104!1.14e-09!238;UBERON:0009142!1.14e-09!238;UBERON:0002294!2.84e-09!7;UBERON:0001173!2.84e-09!7;UBERON:0004912!2.84e-09!7;UBERON:0006853!4.03e-09!3;UBERON:0007685!4.03e-09!3;UBERON:0004134!4.03e-09!3;UBERON:0001045!5.26e-09!11;UBERON:0002075!6.03e-09!18;UBERON:0002108!1.17e-08!14;UBERON:0009569!2.70e-08!113;UBERON:0002100!3.46e-08!216;UBERON:0003103!3.99e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0001264;4.08e-20;10!UBERON:0002075;3.64e-17;18!UBERON:0004913;3.50e-14;1!UBERON:0003703;3.50e-14;1!UBERON:0001174;3.50e-14;1!UBERON:0004914;3.50e-14;1!UBERON:0004645;1.18e-13;1!UBERON:0001256;1.18e-13;1!UBERON:0001259;1.18e-13;1!UBERON:0004211;8.73e-12;10!UBERON:0009773;8.73e-12;10!UBERON:0001231;8.73e-12;10!UBERON:0004810;8.73e-12;10!UBERON:0000489;1.01e-10;29!UBERON:0006554;2.30e-10;30!UBERON:0001008;2.30e-10;30!UBERON:0002113;1.30e-08;24!UBERON:0011143;1.30e-08;24!UBERON:0006555;4.88e-08;15!UBERON:0004819;4.88e-08;15!UBERON:0001285;4.88e-08;15!UBERON:0007684;4.88e-08;15!UBERON:0002323;1.50e-07;45!UBERON:0001255;1.81e-07;2!UBERON:0001556;1.81e-07;2 | |||
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|short_description=p@chr22:30653384..30653392,- | |short_description=p@chr22:30653384..30653392,- | ||
}} | }} |
Latest revision as of 20:04, 28 July 2015
Short description: | p@chr22:30653384..30653392, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30653384..30653392, - |
Coexpression cluster: | C1262_renal_clear_Renal_papillotubular_embryonic_mucinous_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 1.83e-13 | 1 |
lower urinary tract cell | 1.83e-13 | 1 |
kidney cell | 4.33e-12 | 17 |
kidney epithelial cell | 4.33e-12 | 17 |
kidney tubule cell | 8.12e-12 | 10 |
nephron tubule epithelial cell | 8.12e-12 | 10 |
epithelial cell of uterus | 3.71e-09 | 6 |
stromal cell of endometrium | 3.71e-09 | 6 |
epithelial cell of nephron | 4.65e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
pancreas | 3.11e-20 | 10 |
viscus | 3.40e-17 | 18 |
hepatopancreatic ampulla | 3.50e-14 | 1 |
extrahepatic bile duct | 3.50e-14 | 1 |
common bile duct | 3.50e-14 | 1 |
duodenal papilla | 3.50e-14 | 1 |
urinary bladder urothelium | 1.83e-13 | 1 |
wall of urinary bladder | 1.83e-13 | 1 |
mucosa of urinary bladder | 1.83e-13 | 1 |
nephron tubule epithelium | 8.12e-12 | 10 |
trunk region element | 4.16e-11 | 101 |
cavitated compound organ | 5.14e-10 | 31 |
body cavity | 2.04e-09 | 46 |
body cavity or lining | 8.11e-09 | 49 |
nephron epithelium | 4.65e-08 | 15 |
renal tubule | 4.65e-08 | 15 |
nephron tubule | 4.65e-08 | 15 |
nephron | 4.65e-08 | 15 |
uriniferous tubule | 4.65e-08 | 15 |
nephrogenic mesenchyme | 4.65e-08 | 15 |
kidney | 5.57e-08 | 26 |
kidney mesenchyme | 5.57e-08 | 26 |
upper urinary tract | 5.57e-08 | 26 |
kidney rudiment | 5.57e-08 | 26 |
kidney field | 5.57e-08 | 26 |
body cavity precursor | 5.74e-08 | 54 |
excretory tube | 1.38e-07 | 16 |
kidney epithelium | 1.38e-07 | 16 |
urinary bladder | 2.25e-07 | 2 |
lower urinary tract | 2.25e-07 | 2 |
anatomical cavity | 5.21e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 7.67e-26 | 2 |
cystadenocarcinoma | 5.85e-14 | 1 |
mucinous cystadenocarcinoma | 5.85e-14 | 1 |
adenocarcinoma | 1.55e-12 | 25 |
female reproductive endometrioid cancer | 3.71e-09 | 6 |
tubular adenocarcinoma | 9.87e-08 | 2 |
female reproductive organ cancer | 1.36e-07 | 27 |
reproductive organ cancer | 4.43e-07 | 29 |