FFCP PHASE1:Hg19::chr21:44204140..44204160,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:44204140..44204160,+
|short_description=p@chr21:44204140..44204160,+
|description=CAGE_peak_at_chr21:44204140..44204160,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr21:44204140..44204160,+ | |||
|coexpression_cluster_id=C909 | |||
|description=CAGE_peak_at_chr21:44204140..44204160,+ | |||
|id=chr21:44204140..44204160,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.88e-25!140;CL:0000838!2.46e-24!52;CL:0000542!1.26e-23!53;CL:0000051!1.26e-23!53;CL:0002087!1.44e-23!119;CL:0000037!2.02e-22!172;CL:0000566!2.02e-22!172;CL:0000791!8.93e-21!18;CL:0000789!8.93e-21!18;CL:0002420!8.93e-21!18;CL:0002419!8.93e-21!18;CL:0000790!8.93e-21!18;CL:0000988!1.33e-20!182;CL:0002032!6.52e-20!165;CL:0000837!6.52e-20!165;CL:0002031!6.96e-19!124;CL:0000084!9.29e-17!25;CL:0000827!9.29e-17!25;CL:0000625!4.71e-14!11;CL:0000236!2.26e-13!14;CL:0000624!7.38e-08!6;CL:0000945!4.02e-07!24;CL:0000826!4.02e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000236;1.42e-28;13!CL:0000791;4.95e-26;18!CL:0000789;4.95e-26;18!CL:0002419;4.95e-26;18!CL:0000542;2.52e-24;53!CL:0000625;1.84e-21;11!CL:0000084;8.85e-21;25!CL:0000945;2.68e-14;24!CL:0000775;3.36e-11;3!CL:0000898;9.35e-10;3!CL:0000624;3.20e-08;6!CL:0000815;3.43e-07;2!CL:0000792;3.43e-07;2!CL:0002677;3.43e-07;2!CL:0000094;4.80e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.36e-37,52;CL:0000542,3.01e-36,53;CL:0000051,3.01e-36,53;CL:0000236,1.45e-26,14;CL:0000791,3.05e-26,18;CL:0000789,3.05e-26,18;CL:0002420,3.05e-26,18;CL:0002419,3.05e-26,18;CL:0000790,3.05e-26,18;CL:0000625,9.27e-22,11;CL:0000084,7.72e-21,25;CL:0000827,7.72e-21,25;CL:0000738,1.35e-16,136;CL:0002087,4.12e-15,115;CL:0000945,2.02e-14,24;CL:0000826,2.02e-14,24;CL:0002031,4.82e-13,120;CL:0000037,6.93e-12,168;CL:0002032,8.54e-12,161;CL:0000837,8.54e-12,161;CL:0000775,3.32e-11,3;CL:0000988,7.06e-11,177;CL:0000898,7.81e-10,3;CL:0000624,3.54e-08,6;CL:0000815,3.55e-07,2;CL:0000792,3.55e-07,2;CL:0002677,3.55e-07,2;CL:0000094,4.56e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;4.95e-26;18!CL:0000051;2.52e-24;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.62e-12!115;UBERON:0000178!1.92e-09!15;UBERON:0000179!1.92e-09!15;UBERON:0000463!1.92e-09!15;UBERON:0002390!4.45e-08!102;UBERON:0003061!4.45e-08!102;UBERON:0002193!1.21e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.21e-15;15!UBERON:0000179;1.21e-15;15!UBERON:0000463;1.21e-15;15!UBERON:0002390;6.19e-09;32!UBERON:0002370;8.81e-08;2!UBERON:0005058;8.81e-08;2!UBERON:0009113;8.81e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.01e-15,15;UBERON:0000179,1.01e-15,15;UBERON:0000463,1.01e-15,15;UBERON:0002370,6.64e-08,4;UBERON:0005058,6.64e-08,4;UBERON:0009113,6.64e-08,4;UBERON:0003295,6.64e-08,4;UBERON:0005562,6.64e-08,4 | |||
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| ||
|short_description=p@chr21:44204140..44204160,+ | |||
}} | }} |
Latest revision as of 18:13, 28 July 2015
Short description: | p@chr21:44204140..44204160, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:44204140..44204160, + |
Coexpression cluster: | C909_Whole_CD19_CD8_Neutrophils_Eosinophils_CD4_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.36e-37 | 52 |
lymphocyte | 3.01e-36 | 53 |
common lymphoid progenitor | 3.01e-36 | 53 |
B cell | 1.45e-26 | 14 |
mature alpha-beta T cell | 3.05e-26 | 18 |
alpha-beta T cell | 3.05e-26 | 18 |
immature T cell | 3.05e-26 | 18 |
mature T cell | 3.05e-26 | 18 |
immature alpha-beta T cell | 3.05e-26 | 18 |
CD8-positive, alpha-beta T cell | 9.27e-22 | 11 |
T cell | 7.72e-21 | 25 |
pro-T cell | 7.72e-21 | 25 |
leukocyte | 1.35e-16 | 136 |
nongranular leukocyte | 4.12e-15 | 115 |
lymphocyte of B lineage | 2.02e-14 | 24 |
pro-B cell | 2.02e-14 | 24 |
hematopoietic lineage restricted progenitor cell | 4.82e-13 | 120 |
hematopoietic stem cell | 6.93e-12 | 168 |
hematopoietic oligopotent progenitor cell | 8.54e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.54e-12 | 161 |
neutrophil | 3.32e-11 | 3 |
hematopoietic cell | 7.06e-11 | 177 |
naive T cell | 7.81e-10 | 3 |
CD4-positive, alpha-beta T cell | 3.54e-08 | 6 |
regulatory T cell | 3.55e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.55e-07 | 2 |
naive regulatory T cell | 3.55e-07 | 2 |
granulocyte | 4.56e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 1.01e-15 | 15 |
haemolymphatic fluid | 1.01e-15 | 15 |
organism substance | 1.01e-15 | 15 |
thymus | 6.64e-08 | 4 |
hemolymphoid system gland | 6.64e-08 | 4 |
thymic region | 6.64e-08 | 4 |
pharyngeal gland | 6.64e-08 | 4 |
thymus primordium | 6.64e-08 | 4 |