FFCP PHASE1:Hg19::chr20:55213326..55213338,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:55213326..55213338,+ | |||
|coexpression_cluster_id=C4049 | |||
|description=CAGE_peak_at_chr20:55213326..55213338,+ | |description=CAGE_peak_at_chr20:55213326..55213338,+ | ||
|id=chr20:55213326..55213338,+ | |id=chr20:55213326..55213338,+ | ||
|ontology_enrichment_celltype=CL:0000039!2.52e-10!7;CL:0000586!2.52e-10!7;CL:0000066!2.72e-10!254;CL:0002076!8.04e-09!43;CL:0000197!6.48e-07!6;CL:0000098!6.48e-07!6;CL:0002167!6.48e-07!6 | |ontology_enrichment_celltype=CL:0000039!2.52e-10!7;CL:0000586!2.52e-10!7;CL:0000066!2.72e-10!254;CL:0002076!8.04e-09!43;CL:0000197!6.48e-07!6;CL:0000098!6.48e-07!6;CL:0002167!6.48e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.50e-46;7!CL:0000586;1.50e-46;7!CL:0000346;3.91e-13;3!CL:1000428;3.91e-13;3!CL:0002541;6.96e-13;3!CL:0000083;3.62e-10;4!CL:0002552;2.19e-08;5!CL:0002559;3.10e-08;5!CL:0002149;7.08e-07;6!CL:0002255;7.08e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.98e-46,7;CL:0000586,1.98e-46,7;CL:0000346,2.63e-13,3;CL:1000428,2.63e-13,3;CL:0002541,8.87e-13,3;CL:0000083,3.97e-10,4;CL:0002552,2.11e-08,5;CL:0002559,2.45e-08,5;CL:0002149,9.25e-07,6;CL:0002255,9.25e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.01e-08;10!UBERON:0005564;1.01e-08;10 | |||
|ontology_enrichment_disease=DOID:305!1.08e-11!106;DOID:0050687!1.40e-11!143;DOID:1749!9.16e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.39e-14;22!DOID:2994;1.39e-14;22!DOID:1799;7.40e-11;1!DOID:10165;7.40e-11;1!DOID:1798;7.40e-11;1!DOID:1793;3.62e-10;4!DOID:5093;4.44e-10;4!DOID:1612;4.44e-10;4!DOID:170;4.66e-07;6!DOID:3001;7.08e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.52e-14,22;DOID:2994,1.52e-14,22;DOID:1799,7.40e-11,1;DOID:10165,7.40e-11,1;DOID:1798,7.40e-11,1;DOID:5093,3.97e-10,4;DOID:1793,3.97e-10,4;DOID:1612,3.97e-10,4;DOID:0050687,1.42e-08,143;DOID:170,4.95e-07,6;DOID:305,5.17e-07,106;DOID:3001,9.25e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.21e-14!95;UBERON:0004119!1.54e-12!169;UBERON:0000925!1.54e-12!169;UBERON:0006595!1.54e-12!169;UBERON:0000161!6.02e-12!35;UBERON:0001007!1.87e-11!155;UBERON:0001555!1.87e-11!155;UBERON:0007026!1.87e-11!155;UBERON:0000165!1.07e-09!28;UBERON:0000930!1.07e-09!28;UBERON:0005156!3.11e-08!59;UBERON:0000990!3.11e-08!59;UBERON:0000166!2.25e-07!21;UBERON:0004923!3.63e-07!57;UBERON:0000344!4.32e-07!12;UBERON:0005631!5.41e-07!14;UBERON:0000158!5.41e-07!14;UBERON:0001828!6.16e-07!8;UBERON:0001004!7.57e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;3.91e-13;3!UBERON:0001992;3.91e-13;3!UBERON:0003124;6.96e-13;3!UBERON:0000920;6.96e-13;3!UBERON:0000473;8.94e-11;8!UBERON:0002073;3.10e-08;5!UBERON:0003135;5.66e-08;11!UBERON:0002323;3.48e-07;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,2.63e-13,3;UBERON:0001992,2.63e-13,3;UBERON:0000920,8.87e-13,3;UBERON:0000473,9.73e-11,8;UBERON:0002073,2.45e-08,5;UBERON:0005086,2.45e-08,5;UBERON:0003135,6.02e-08,11 | |||
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| ||
|short_description=p@chr20:55213326..55213338,+ | |short_description=p@chr20:55213326..55213338,+ | ||
}} | }} |
Latest revision as of 15:39, 28 July 2015
Short description: | p@chr20:55213326..55213338, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:55213326..55213338, + |
Coexpression cluster: | C4049_choriocarcinoma_MCF7_pancreatic_Hair_breast_testicular_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.98e-46 | 7 |
germ cell | 1.98e-46 | 7 |
hair follicle dermal papilla cell | 2.63e-13 | 3 |
stem cell of epidermis | 2.63e-13 | 3 |
chorionic membrane mesenchymal stem cell | 8.87e-13 | 3 |
epithelial cell of pancreas | 3.97e-10 | 4 |
fibroblast of gingiva | 2.11e-08 | 5 |
hair follicle cell | 2.45e-08 | 5 |
epithelial cell of uterus | 9.25e-07 | 6 |
stromal cell of endometrium | 9.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 2.63e-13 | 3 |
papillary layer of dermis | 2.63e-13 | 3 |
egg chorion | 8.87e-13 | 3 |
testis | 9.73e-11 | 8 |
hair follicle | 2.45e-08 | 5 |
hair follicle placode | 2.45e-08 | 5 |
male reproductive organ | 6.02e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.52e-14 | 22 |
germ cell cancer | 1.52e-14 | 22 |
islet cell tumor | 7.40e-11 | 1 |
endocrine pancreas cancer | 7.40e-11 | 1 |
pancreatic endocrine carcinoma | 7.40e-11 | 1 |
thoracic cancer | 3.97e-10 | 4 |
pancreatic cancer | 3.97e-10 | 4 |
breast cancer | 3.97e-10 | 4 |
cell type cancer | 1.42e-08 | 143 |
endocrine gland cancer | 4.95e-07 | 6 |
carcinoma | 5.17e-07 | 106 |
female reproductive endometrioid cancer | 9.25e-07 | 6 |