FFCP PHASE1:Hg19::chr20:50479417..50479427,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_ENST00000438154_5end | |association_with_transcript=23bp_to_ENST00000438154_5end | ||
|cluster_id=chr20:50479417..50479427,- | |||
|coexpression_cluster_id=C112 | |||
|description=CAGE_peak_2_at_ENST00000438154_5end | |description=CAGE_peak_2_at_ENST00000438154_5end | ||
|id=chr20:50479417..50479427,- | |id=chr20:50479417..50479427,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.03e-17;3!CL:0002202;8.61e-07;9!CL:0002632;8.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.25e-07;30 | |||
|ontology_enrichment_disease=DOID:162!5.65e-09!235;DOID:14566!1.01e-08!239;DOID:1115!2.62e-07!20;DOID:0050687!8.14e-07!143 | |ontology_enrichment_disease=DOID:162!5.65e-09!235;DOID:14566!1.01e-08!239;DOID:1115!2.62e-07!20;DOID:0050687!8.14e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:3910;8.10e-26;2!DOID:3908;3.42e-11;5!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,9.18e-26,2;DOID:3908,3.60e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001282!1.98e-10!1;UBERON:0009842!1.98e-10!1;UBERON:0003704!1.98e-10!1;UBERON:0001171!1.98e-10!1;UBERON:0001172!1.98e-10!1 | |ontology_enrichment_uberon=UBERON:0001282!1.98e-10!1;UBERON:0009842!1.98e-10!1;UBERON:0003704!1.98e-10!1;UBERON:0001171!1.98e-10!1;UBERON:0001172!1.98e-10!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001282;5.12e-50;1!UBERON:0009842;5.12e-50;1!UBERON:0003704;5.12e-50;1!UBERON:0001171;5.12e-50;1!UBERON:0001172;5.12e-50;1!UBERON:0004903;8.10e-26;2!UBERON:0002173;8.10e-26;2!UBERON:0002186;8.10e-26;2!UBERON:0000058;1.04e-20;10!UBERON:0004821;1.03e-17;3!UBERON:0007499;1.03e-17;3!UBERON:0003215;1.03e-17;3!UBERON:0010368;1.03e-17;3!UBERON:0009911;1.03e-17;3!UBERON:0002299;1.03e-17;3!UBERON:0001280;1.03e-17;3!UBERON:0004647;1.03e-17;3!UBERON:0006524;1.03e-17;3!UBERON:0008874;1.03e-17;3!UBERON:0002169;1.03e-17;3!UBERON:0004894;1.03e-17;3!UBERON:0002394;1.21e-13;4!UBERON:0003928;1.21e-13;4!UBERON:0009856;1.21e-13;4!UBERON:0000945;2.66e-11;5!UBERON:0010039;2.66e-11;5!UBERON:0002294;2.26e-08;7!UBERON:0001173;2.26e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,3.99e-50,1;UBERON:0009842,3.99e-50,1;UBERON:0003704,3.99e-50,1;UBERON:0001171,3.99e-50,1;UBERON:0001172,3.99e-50,1;UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0001280,9.46e-18,3;UBERON:0004647,9.46e-18,3;UBERON:0005171,9.46e-18,3;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3;UBERON:0000058,1.91e-11,19;UBERON:0002394,1.44e-09,6;UBERON:0003928,1.44e-09,6;UBERON:0007499,5.95e-09,25;UBERON:0009856,1.20e-08,26;UBERON:0000945,1.49e-07,8;UBERON:0010039,1.49e-07,8;UBERON:0002294,8.37e-07,9;UBERON:0001173,8.37e-07,9;UBERON:0004912,8.37e-07,9 | |||
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|short_description=p2@ENST00000438154 | |short_description=p2@ENST00000438154 | ||
}} | }} |
Latest revision as of 15:24, 28 July 2015
Short description: | p2@ENST00000438154 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000438154_5end |
Coexpression cluster: | C112_gastric_pancreas_temporal_duodenum_small_extraskeletal_adrenal |
Association with transcript: | 23bp_to_ENST00000438154_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 3.99e-50 | 1 |
acinus | 3.99e-50 | 1 |
intrahepatic bile duct | 3.99e-50 | 1 |
portal lobule | 3.99e-50 | 1 |
hepatic acinus | 3.99e-50 | 1 |
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
liver parenchyma | 9.46e-18 | 3 |
liver lobule | 9.46e-18 | 3 |
hepatic duct | 9.46e-18 | 3 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
duct | 1.91e-11 | 19 |
bile duct | 1.44e-09 | 6 |
digestive system duct | 1.44e-09 | 6 |
epithelial sac | 5.95e-09 | 25 |
sac | 1.20e-08 | 26 |
stomach | 1.49e-07 | 8 |
food storage organ | 1.49e-07 | 8 |
biliary system | 8.37e-07 | 9 |
biliary tree | 8.37e-07 | 9 |
biliary bud | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 9.18e-26 | 2 |
non-small cell lung carcinoma | 3.60e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
lung carcinoma | 8.85e-07 | 9 |