FFCP PHASE1:Hg19::chr20:49983397..49983415,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:49983397..49983415,+ | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr20:49983397..49983415,+ | |description=CAGE_peak_at_chr20:49983397..49983415,+ | ||
|id=chr20:49983397..49983415,+ | |id=chr20:49983397..49983415,+ | ||
|ontology_enrichment_celltype=CL:0000064!6.89e-08!3;CL:0005012!6.89e-08!3;CL:0000067!6.89e-08!3;CL:0002304!6.89e-08!3;CL:0002582!7.30e-07!3 | |ontology_enrichment_celltype=CL:0000064!6.89e-08!3;CL:0005012!6.89e-08!3;CL:0000067!6.89e-08!3;CL:0002304!6.89e-08!3;CL:0002582!7.30e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002379;4.22e-21;1!CL:0000306;9.44e-21;4!CL:0002222;9.44e-21;4!CL:0002224;9.44e-21;4!CL:0002166;6.34e-08;3!CL:0000075;3.09e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,3.45e-21,1;CL:0000306,9.46e-21,4;CL:0002222,9.46e-21,4;CL:0002224,9.46e-21,4;CL:0002166,6.78e-08,3;CL:0000075,3.02e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.33e-15!14;DOID:193!6.30e-13!29;DOID:120!4.56e-12!27;DOID:162!1.05e-07!235;DOID:14566!2.48e-07!239 | |ontology_enrichment_disease=DOID:2394!1.33e-15!14;DOID:193!6.30e-13!29;DOID:120!4.56e-12!27;DOID:162!1.05e-07!235;DOID:14566!2.48e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:3620;4.22e-21;1!DOID:3565;4.22e-21;1!DOID:3093;1.24e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,3.45e-21,1;DOID:3565,3.45e-21,1;DOID:3093,1.20e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000992!5.67e-11!13;UBERON:0002119!1.93e-10!4;UBERON:0004531!1.93e-10!4;UBERON:0001048!3.62e-10!168;UBERON:0007625!5.43e-10!11;UBERON:0000488!6.80e-10!4;UBERON:0002118!4.30e-08!5;UBERON:0004532!4.30e-08!5;UBERON:0001778!6.89e-08!3;UBERON:0001775!6.89e-08!3;UBERON:0001801!1.38e-07!14 | |ontology_enrichment_uberon=UBERON:0000992!5.67e-11!13;UBERON:0002119!1.93e-10!4;UBERON:0004531!1.93e-10!4;UBERON:0001048!3.62e-10!168;UBERON:0007625!5.43e-10!11;UBERON:0000488!6.80e-10!4;UBERON:0002118!4.30e-08!5;UBERON:0004532!4.30e-08!5;UBERON:0001778!6.89e-08!3;UBERON:0001775!6.89e-08!3;UBERON:0001801!1.38e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;9.44e-21;4!UBERON:0005389;9.44e-21;4!UBERON:0000484;9.44e-21;4!UBERON:0000965;9.44e-21;4!UBERON:0001803;9.44e-21;4!UBERON:0007625;3.62e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,9.46e-21,4;UBERON:0005389,9.46e-21,4;UBERON:0000484,9.46e-21,4;UBERON:0002546,9.46e-21,4;UBERON:0000965,9.46e-21,4;UBERON:0001803,9.46e-21,4;UBERON:0003073,9.46e-21,4;UBERON:0005426,9.46e-21,4;UBERON:0000076,6.94e-11,8;UBERON:0007625,3.63e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0,0.730310090387373,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.886917589850256,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.34385702559088,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0.258543431515556,0,1.690605505112,0,0,0,0,0,0,0,0,0.977208552881205,0,0,1.50719688529793,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0.457847324091717,0.165018999841176,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,0,0,0.222617410045812,0,0,0,0,0,10.4314056152198,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0.69647365264322,0,0,0,0.146178634172371,0,0,0,0,0.959293472527256,0.794858446811959,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,1.41159491818903,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0.228840068396924,0,0.15543720058278,0.73927574994817,0.796483835818512,0.449803112163605,1.39736661188633,0.414706207840855,0,1.04349012362347,0.150257608997218,0,0.406870733204662,0.545545977607678,0.751873899297419,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0,0,0.537266523244462,0,0,0,0.38582807654183,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0,0.730310090387373,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.886917589850256,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,0,1.34385702559088,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0.258543431515556,0,1.690605505112,0,0,0,0,0,0,0,0,0.977208552881205,0,0,1.50719688529793,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0.457847324091717,0.165018999841176,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,0,0,0.222617410045812,0,0,0,0,0,10.4314056152198,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0.69647365264322,0,0,0,0.146178634172371,0,0,0,0,0.959293472527256,0.794858446811959,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,1.41159491818903,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0.228840068396924,0,0.15543720058278,0.73927574994817,0.796483835818512,0.449803112163605,1.39736661188633,0.414706207840855,0,1.04349012362347,0.150257608997218,0,0.406870733204662,0.545545977607678,0.751873899297419,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0,0,0.537266523244462,0,0,0,0.38582807654183,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:49983397..49983415,+ | |short_description=p@chr20:49983397..49983415,+ | ||
}} | }} |
Latest revision as of 15:19, 28 July 2015
Short description: | p@chr20:49983397..49983415, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:49983397..49983415, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 3.45e-21 | 1 |
crystallin accumulating cell | 9.46e-21 | 4 |
vertebrate lens cell | 9.46e-21 | 4 |
lens epithelial cell | 9.46e-21 | 4 |
epithelial cell of Malassez | 6.78e-08 | 3 |
columnar/cuboidal epithelial cell | 3.02e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 9.46e-21 | 4 |
transparent eye structure | 9.46e-21 | 4 |
simple cuboidal epithelium | 9.46e-21 | 4 |
cranial placode | 9.46e-21 | 4 |
lens of camera-type eye | 9.46e-21 | 4 |
epithelium of lens | 9.46e-21 | 4 |
lens placode | 9.46e-21 | 4 |
lens vesicle | 9.46e-21 | 4 |
external ectoderm | 6.94e-11 | 8 |
pigment epithelium of eye | 3.63e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 3.45e-21 | 1 |
meningioma | 3.45e-21 | 1 |
nervous system cancer | 1.20e-07 | 11 |