FFCP PHASE1:Hg19::chr20:42328643..42328657,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:42328643..42328657,+ | |||
|description=CAGE_peak_at_chr20:42328643..42328657,+ | |description=CAGE_peak_at_chr20:42328643..42328657,+ | ||
|id=chr20:42328643..42328657,+ | |id=chr20:42328643..42328657,+ | ||
|ontology_enrichment_celltype=CL:0000785;5.52e-17;1!CL:0000819;5.52e-17;1!CL:0002188;3.88e-13;5!CL:1000746;1.18e-09;7!CL:1000612;1.18e-09;7!CL:0000123;6.17e-09;2!CL:0000242;6.17e-09;2 | |ontology_enrichment_celltype=CL:0000066!1.56e-11!254;CL:0000548!1.87e-08!679;CL:0000004!1.87e-08!679;CL:0000255!1.87e-08!679;CL:0000012!3.57e-08!682 | ||
| | |ontology_enrichment_celltype_v019=CL:0000785;5.52e-17;1!CL:0000819;5.52e-17;1!CL:0002188;3.88e-13;5!CL:1000746;1.18e-09;7!CL:1000612;1.18e-09;7!CL:0000123;6.17e-09;2!CL:0000242;6.17e-09;2 | ||
|ontology_enrichment_disease=DOID:0060073;5.52e-17;1!DOID:8675;5.52e-17;1!DOID:225;1.53e-16;1!DOID:74;6.17e-09;2!DOID:0060058;4.19e-07;10 | |ontology_enrichment_celltype_v019_2=CL:0000819,5.53e-17,1;CL:0002188,3.88e-13,5;CL:1000746,1.18e-09,7;CL:1000612,1.18e-09,7;CL:0000785,3.71e-09,2;CL:0000955,3.71e-09,2;CL:0000818,3.71e-09,2;CL:0000954,3.71e-09,2;CL:0000816,3.71e-09,2;CL:0000242,4.34e-09,2 | ||
|ontology_enrichment_uberon=UBERON:0000074;1.18e-09;7!UBERON:0001229;1.18e-09;7 | |ontology_enrichment_development_v019=CL:0000954;3.71e-09;2 | ||
|ontology_enrichment_disease=DOID:162!7.38e-24!235;DOID:14566!1.36e-22!239;DOID:2531!3.22e-13!51;DOID:0060083!3.22e-13!51;DOID:0050686!9.11e-11!137;DOID:1240!4.83e-09!39;DOID:0050687!5.04e-09!143;DOID:305!8.46e-09!106;DOID:0060058!8.83e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:0060073;5.52e-17;1!DOID:8675;5.52e-17;1!DOID:225;1.53e-16;1!DOID:74;6.17e-09;2!DOID:0060058;4.19e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,5.53e-17,1;DOID:8675,5.53e-17,1;DOID:225,1.41e-16,1;DOID:74,5.94e-09,2;DOID:2531,1.50e-07,51;DOID:0060083,1.50e-07,51;DOID:0060058,4.26e-07,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.18e-09;7!UBERON:0001229;1.18e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.18e-09,7;UBERON:0000074,1.18e-09,7;UBERON:0001229,1.18e-09,7;UBERON:0001230,1.18e-09,7;UBERON:0003220,1.18e-09,7;UBERON:0005749,1.18e-09,7;UBERON:0004199,1.18e-09,7;UBERON:0004209,1.18e-09,7;UBERON:0004198,1.18e-09,7;UBERON:0005103,1.47e-08,8;UBERON:0000083,1.47e-08,8;UBERON:0009201,1.47e-08,8;UBERON:0006553,1.47e-08,8;UBERON:0003074,1.47e-08,8;UBERON:0003060,1.47e-08,8;UBERON:0000080,1.05e-07,9;UBERON:0002120,1.05e-07,9;UBERON:0004875,1.05e-07,9;UBERON:0005721,1.05e-07,9;UBERON:0005754,1.05e-07,9;UBERON:0007297,1.05e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0.218441372130172,0,0,0,0,0,0.730310090387373,0,0,0,0.313454721478088,0,0.273748850145768,0.251085279189606,0.382067028739756,0.246301768349837,0.236132343941038,0,0,0,0,0.30120591877825,0,0.387336002901508,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0,0.328875809207352,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0.17859945656816,0,0,0,0.949265659568129,0.183201743930407,0,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0.375355559615893,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0.169560592310488,0,0.272746120590835,0,0.243947412259191,0.397589304964456,0.69716365721711,0.414644220061482,0.756962552626885,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.441175890929576,0.217879444092406,0.71181185733329,0.539325232640658,0.392442930250692,0.38474715694639,0.738155454624648,0,0,0,0,0,0,1.32438929824395,0.122988438543114,0.171567810298526,0.109750285408626,0,0.402115889646523,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0.581267877027924,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,0,0,0,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,1.00034104211935,0.271265023699736,0,0.535286966391485,0.473107245101804,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0.907170879989041,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0.116210378459959,0.604297247958111,0,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0,1.13733384070897,0.510281115829547,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0.784306353074702,0,0.328014645699706,0,0,0.54941678891006,0,0,0.650060246036521,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0.35667105148125,0.354761064070598,0,0,0.379473173765715,0.349934720244983,0.192444225451024,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0.371606350251437,0.144269212976445,0.142283686696828,0.478278818186467,1.39705560002972,0,0,0,0.842391534340376,0.228234679033192,0.47003968731907,0,0.169291777801603,0.1605880751037,0.605399121573143,0.425846237690326,0.687010689511529,0.307240764308458,0,0.333698283423817,0.976940477010201,0.278406173895242,0,1.08182271390393,0,0,0.18714054040822,0,0.242721043499027,0.111443384277478,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0.341380344856499,0,0,0.344743373241465,0.291604613383254,0.173624994933292,0,0,0,0,0,0,0.10893846351899,0,0,0,0.23056390438806,0.718061155278177,0.217294743844016,0,0.274792780205587,0,4.08773192782946,0.156980256395025,0.166211681900156,0,0.19606253431774,0.335643173951685,0.189753732724185,0,0.210998064528027,0.489698424477443,0.282706142867882,0,0,0,0,0,0,0,0,0,0,3.10173141666632,0,0,0,0,0,0,0.751617097072463,0.622129148383483,0,0,0,0,0,0,0.347119476670262,0,0.0870592065804026,0,0,0.387025325156341,0.146178634172371,0.246346371159628,0,0,0,0,0,0,0.195551382734803,0,0,0.39961921916426,0,0.114536596165916,0.686379991447858,0,0.124252535565433,0,0.271808412147228,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.576911008668165,0.404421263125109,0.0984274815147488,0.254019996197353,0,0.136203406111576,0.482259445395058,0.825236619583403,2.49264202817511,0,0,0,0.335434687599266,0,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0.852548188666271,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0.249960815924213,0.151649117541648,0,0,1.87333962322753,0.28984205722165,0,0.233713309847224,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0.453411851024545,0.231522474323834,0.734210113519403,0.358177682162975,0.617602894321944,0,0,0,0.168942440653073,0,1.0362910251936,0.303859956177382,0,0,0,0,0,0,0,0.39997479170986,1.38699248602383,0,0,0,0,0,0,0.215649622793364,0.157265941855896,0,0.678930119816101,0.212574920101683,0.123935764259002,0,0,0.0788617450012534,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0.261906694481422,0.818859587550484,0,0,0,0,0,0,0,0,0,0.2555248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| ||
|short_description=p@chr20:42328643..42328657,+ | |short_description=p@chr20:42328643..42328657,+ | ||
}} | }} |
Latest revision as of 14:08, 28 July 2015
Short description: | p@chr20:42328643..42328657, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:42328643..42328657, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 5.53e-17 | 1 |
glomerular endothelial cell | 3.88e-13 | 5 |
glomerular cell | 1.18e-09 | 7 |
kidney corpuscule cell | 1.18e-09 | 7 |
mature B cell | 3.71e-09 | 2 |
pre-B-II cell | 3.71e-09 | 2 |
transitional stage B cell | 3.71e-09 | 2 |
small pre-B-II cell | 3.71e-09 | 2 |
immature B cell | 3.71e-09 | 2 |
Merkel cell | 4.34e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.18e-09 | 7 |
renal glomerulus | 1.18e-09 | 7 |
renal corpuscle | 1.18e-09 | 7 |
glomerular capsule | 1.18e-09 | 7 |
metanephric mesenchyme | 1.18e-09 | 7 |
glomerular tuft | 1.18e-09 | 7 |
S-shaped body | 1.18e-09 | 7 |
renal vesicle | 1.18e-09 | 7 |
comma-shaped body | 1.18e-09 | 7 |
mesonephric epithelium | 1.47e-08 | 8 |
mesonephric tubule | 1.47e-08 | 8 |
nephric duct | 1.47e-08 | 8 |
renal duct | 1.47e-08 | 8 |
mesonephric duct | 1.47e-08 | 8 |
pronephric duct | 1.47e-08 | 8 |
mesonephros | 1.05e-07 | 9 |
pronephros | 1.05e-07 | 9 |
nephrogenic cord | 1.05e-07 | 9 |
pronephric mesoderm | 1.05e-07 | 9 |
rostral part of nephrogenic cord | 1.05e-07 | 9 |
presumptive pronephric mesoderm | 1.05e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 5.53e-17 | 1 |
lymphosarcoma | 5.53e-17 | 1 |
syndrome | 1.41e-16 | 1 |
hematopoietic system disease | 5.94e-09 | 2 |
hematologic cancer | 1.50e-07 | 51 |
immune system cancer | 1.50e-07 | 51 |
lymphoma | 4.26e-07 | 10 |