FFCP PHASE1:Hg19::chr20:35176468..35176476,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:35176468..35176476,- | |||
|coexpression_cluster_id=C384 | |coexpression_cluster_id=C384 | ||
|description=CAGE_peak_at_chr20:35176468..35176476,- | |description=CAGE_peak_at_chr20:35176468..35176476,- | ||
|id=chr20:35176468..35176476,- | |id=chr20:35176468..35176476,- | ||
|ontology_enrichment_celltype=CL:0002334;1.96e-09;12!CL:0000192;2.22e-08;43!CL:0000187;5.18e-07;55 | |ontology_enrichment_celltype=CL:0000055!5.21e-23!180;CL:0000057!1.33e-12!75;CL:0000680!3.24e-12!57;CL:0000056!3.24e-12!57;CL:0000355!3.24e-12!57;CL:0000183!1.01e-11!59;CL:0000187!2.45e-11!54;CL:0000393!3.97e-11!60;CL:0000211!3.97e-11!60;CL:0000192!1.52e-09!42;CL:0000514!1.52e-09!42;CL:0002334!3.10e-07!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0002334;1.96e-09;12!CL:0000192;2.22e-08;43!CL:0000187;5.18e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.39e-13,76;CL:0000680,2.79e-12,58;CL:0000056,2.79e-12,58;CL:0000355,2.79e-12,58;CL:0000192,1.13e-11,43;CL:0000514,1.13e-11,43;CL:0000187,3.64e-11,55;CL:0000393,3.82e-10,61;CL:0000211,3.82e-10,61;CL:0002334,2.32e-09,12;CL:0000048,8.33e-07,427;CL:0000359,9.97e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.22e-08;43!CL:0000355;4.14e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004457;1.08e-07;9!UBERON:0000042;1.08e-07;9!UBERON:0001013;5.33e-07;14 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.60e-13!143;UBERON:0002385!3.22e-12!63;UBERON:0001015!3.22e-12!63;UBERON:0000383!3.22e-12!63;UBERON:0001134!2.64e-11!61;UBERON:0002036!2.64e-11!61;UBERON:0003082!2.64e-11!61;UBERON:0000914!1.38e-10!83;UBERON:0002329!1.38e-10!83;UBERON:0003077!1.38e-10!83;UBERON:0003059!1.38e-10!83;UBERON:0007282!1.38e-10!83;UBERON:0009618!1.38e-10!83;UBERON:0007285!1.38e-10!83;UBERON:0004290!2.39e-10!70;UBERON:0000481!7.42e-10!347;UBERON:0000486!2.02e-09!82;UBERON:0002100!7.09e-09!216;UBERON:0003104!7.21e-09!238;UBERON:0009142!7.21e-09!238;UBERON:0000468!1.36e-08!659;UBERON:0000490!2.40e-07!138;UBERON:0000926!5.26e-07!448;UBERON:0004120!5.26e-07!448;UBERON:0006603!5.26e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.08e-07;9!UBERON:0000042;1.08e-07;9!UBERON:0001013;5.33e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,9.19e-14,160;UBERON:0009142,9.19e-14,160;UBERON:0005256,1.16e-13,122;UBERON:0002385,1.93e-12,64;UBERON:0001015,1.93e-12,64;UBERON:0000383,1.93e-12,64;UBERON:0007503,8.66e-12,78;UBERON:0007524,1.51e-11,73;UBERON:0001134,2.58e-11,62;UBERON:0002036,2.58e-11,62;UBERON:0003082,2.58e-11,62;UBERON:0002329,2.80e-11,71;UBERON:0003059,2.80e-11,71;UBERON:0007282,2.80e-11,71;UBERON:0004290,2.80e-11,71;UBERON:0009618,2.80e-11,71;UBERON:0003077,6.18e-11,72;UBERON:0007285,6.18e-11,72;UBERON:0000926,1.36e-09,315;UBERON:0004120,1.36e-09,315;UBERON:0006603,1.36e-09,315;UBERON:0000486,1.39e-09,83;UBERON:0002100,1.51e-08,199;UBERON:0001013,4.73e-07,14 | |||
|phase1_expression=11.6274162733156,6.42301571672949,6.62485699251064,20.0146596706261,17.4314826826642,20.9361245784089,32.9289841618804,1.89515962028049,0.522371256399677,2.7030733015166,6.97801167972428,0,0.263766978228454,0.618831764800233,1.65698687863958,8.0679017574213,9.04041792035965,3.65155045193687,15.1259167625057,0.492484232307152,0.408001382488506,1.56727360739044,0.85870796139317,0.821246550437305,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,1.34140171940727,1.79007586580942,6.14446559053763,2.50668955317945,2.02785126545153,0,0.973269740605272,1.32348744029695,2.4390233720882,1.58102614247627,1.44076983047484,0.728590576585084,0.741568885568859,0.97364218096405,0.696518949197069,0.797747763113191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976248230192678,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,5.96366342034382,2.65924074495618,1.05927344650575,0.860509862246441,1.41867352879343,4.48542080113846,2.1349799145941,14.0600502597781,0.622422070799533,0.67355336034844,0.326923806226917,0.756787138224657,0.576175924479999,0,1.5608003841516,0,1.49448680551801,0,0,0,0,1.10550885580591,0.206651562351531,7.12801714369232,12.857880322485,0,2.15585442544872,0.168336113954066,0.125118519871964,0,5.70670907145089,14.4049264025539,12.6199969481541,3.97012641060074,3.58779271377724,2.98980344345994,4.23863802319124,3.00091096084402,2.16410311400722,4.3798891807757,3.90845398296339,0.168776332241266,2.63079913935236,3.78650661366172,4.69454483075727,0.646584227275248,2.84007674013291,4.83610071492673,3.22165125389926,0,0,0,1.09776335516636,0.662648841607426,0.348581828608555,0.725627385107593,1.26160425437814,0,6.25798129319264,20.5837100221723,0,3.71494342425583,9.38443326170461,0.828147600278907,0.505754070234305,0.723033089650446,0.661763836394364,0.653638332277218,0.474541238222193,0.943819157121151,0.98110732562673,0.769494313892781,0,7.01208869017229,4.9388881359768,7.3504355692771,0,0,0.590789906681404,0,0.245976877086227,0.686271241194102,0.109750285408626,0,0,0,0,1.03993478527958,2.88662684050547,0.115930404975077,4.10930429825376,0.144366447761074,0,0.380508304469197,0,0,0,0.234004265139238,0.445893486866185,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.411309970813294,0.300343057843917,0.285826432630578,0.112131084345361,0.87192013766656,0.80672114403045,4.91232519879556,14.3062578340753,2.535908257668,8.77595784730073,19.7614130131596,1.02882949704857,0,0.266422179016099,2.7165818795048,1.62786481617433,0.823240336780769,1.30294473717494,2.84313558994037,0.791951872933429,2.41151501647669,0,5.39854152383108,0,0,0,8.38686994220539,17.2292903751171,1.42636905040718,3.18518874668674,1.84928690295345,1.61154866915906,0,0,0,0,0.254094624222463,0,1.54657762555539,0.335032530668698,0,0,0,0,1.10422342547226,3.50119364741774,2.44138521329762,16.221727199403,6.0665856191035,8.35822799679854,13.1198384791839,0,0,5.17365356462525,5.97803038681893,1.10621501125022,3.99664626553181,0.587403472388222,2.40200396667599,0,0,0,0,1.66435439510497,0.604780586659361,3.96972492510043,3.52962538562544,7.57782254969299,3.58789617915963,3.58195074346692,10.7772127166217,10.3892646511494,2.31314540703983,5.68197521002007,2.46381468041427,2.07701771673448,5.11325665223821,0.846016147141356,0.802025881213139,0,2.87036120411517,5.64482620820823,5.76947425821466,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,0,0,0.863663664408557,1.54227252690289,1.08378575017541,4.01351819083883,0,0,0.447749509444357,0,0,0,1.64007322849853,0.325378394664303,1.03041011647722,0.366277859273374,0.247528499761764,0,0,3.21367859688319,0.96670718292122,0.154048617114644,0.921022048356777,1.10269257987624,0.537101224341368,0.580066775656914,0.255679882248303,3.29418531892928,0,0.576570202095319,0,0.10115778085555,4.64845549297286,0.94443704049192,0,1.23213432070436,1.06461206063404,0,4.07713282028624,0,2.232950216158,6.01120906965579,11.2471814415057,3.83846686967001,1.71175595213568,0.95460974377781,3.13979456079692,4.31693898199955,3.29444435683266,3.53437207037059,1.41527737101321,0,0.421258456238981,3.41343617362713,1.94970791705028,1.05650146756755,4.7774968992795,3.11091950298168,0,0,3.98063385144732,0.876901770507525,2.31510213706675,1.31178950409327,1.62328301570163,1.239293992399,2.81695602532241,1.86434757865267,8.15467040408906,1.426684205925,2.48332744849418,2.32218398827431,3.95153871551882,0,2.44954304171488,0,0,0,0.282431402330337,0.43050537267123,0,0.886860307073351,0.689170200620878,1.52234282769651,0,2.27858874869665,0.476463550915578,0,0.648473311192717,0.540031437238115,1.58625035258854,0.640944426764839,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,1.75809815126273,1.21360521749513,0,0,0.238744484737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| ||
|short_description=p@chr20:35176468..35176476,- | |short_description=p@chr20:35176468..35176476,- | ||
}} | }} |
Latest revision as of 13:35, 28 July 2015
Short description: | p@chr20:35176468..35176476, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35176468..35176476, - |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.39e-13 | 76 |
muscle precursor cell | 2.79e-12 | 58 |
myoblast | 2.79e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.79e-12 | 58 |
smooth muscle cell | 1.13e-11 | 43 |
smooth muscle myoblast | 1.13e-11 | 43 |
muscle cell | 3.64e-11 | 55 |
electrically responsive cell | 3.82e-10 | 61 |
electrically active cell | 3.82e-10 | 61 |
preadipocyte | 2.32e-09 | 12 |
multi fate stem cell | 8.33e-07 | 427 |
vascular associated smooth muscle cell | 9.97e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 9.19e-14 | 160 |
entire embryonic mesenchyme | 9.19e-14 | 160 |
trunk mesenchyme | 1.16e-13 | 122 |
muscle tissue | 1.93e-12 | 64 |
musculature | 1.93e-12 | 64 |
musculature of body | 1.93e-12 | 64 |
epithelial vesicle | 8.66e-12 | 78 |
dense mesenchyme tissue | 1.51e-11 | 73 |
skeletal muscle tissue | 2.58e-11 | 62 |
striated muscle tissue | 2.58e-11 | 62 |
myotome | 2.58e-11 | 62 |
somite | 2.80e-11 | 71 |
presomitic mesoderm | 2.80e-11 | 71 |
presumptive segmental plate | 2.80e-11 | 71 |
dermomyotome | 2.80e-11 | 71 |
trunk paraxial mesoderm | 2.80e-11 | 71 |
paraxial mesoderm | 6.18e-11 | 72 |
presumptive paraxial mesoderm | 6.18e-11 | 72 |
mesoderm | 1.36e-09 | 315 |
mesoderm-derived structure | 1.36e-09 | 315 |
presumptive mesoderm | 1.36e-09 | 315 |
multilaminar epithelium | 1.39e-09 | 83 |
trunk | 1.51e-08 | 199 |
adipose tissue | 4.73e-07 | 14 |