FFCP PHASE1:Hg19::chr20:35176429..35176448,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:35176429..35176448,+
|short_description=p@chr20:35176429..35176448,+
|description=CAGE_peak_at_chr20:35176429..35176448,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:35176429..35176448,+ | |||
|coexpression_cluster_id=C384 | |||
|description=CAGE_peak_at_chr20:35176429..35176448,+ | |||
|id=chr20:35176429..35176448,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.85e-20!180;CL:0000057!4.06e-14!75;CL:0000192!1.51e-12!42;CL:0000514!1.51e-12!42;CL:0000183!2.08e-11!59;CL:0000680!4.59e-11!57;CL:0000056!4.59e-11!57;CL:0000355!4.59e-11!57;CL:0000187!1.15e-10!54;CL:0000359!1.57e-09!32;CL:0000393!4.55e-09!60;CL:0000211!4.55e-09!60;CL:0000136!7.56e-08!15;CL:0000222!2.80e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.98e-09;13!CL:0000134;3.97e-08;55!CL:0000192;5.08e-08;43!CL:0000359;1.12e-07;32!CL:0002334;4.06e-07;12!CL:0000048;5.06e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.97e-12,76;CL:0000192,6.21e-11,43;CL:0000514,6.21e-11,43;CL:0000136,3.55e-10,15;CL:0000359,3.72e-08,32;CL:0002334,2.72e-07,12;CL:0000680,3.20e-07,58;CL:0000056,3.20e-07,58;CL:0000355,3.20e-07,58;CL:0000187,4.72e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;5.08e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.21e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.34e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!4.86e-14!143;UBERON:0002385!4.91e-13!63;UBERON:0001015!4.91e-13!63;UBERON:0000383!4.91e-13!63;UBERON:0000914!5.52e-13!83;UBERON:0002329!5.52e-13!83;UBERON:0003077!5.52e-13!83;UBERON:0003059!5.52e-13!83;UBERON:0007282!5.52e-13!83;UBERON:0009618!5.52e-13!83;UBERON:0007285!5.52e-13!83;UBERON:0004290!2.22e-12!70;UBERON:0001134!5.93e-12!61;UBERON:0002036!5.93e-12!61;UBERON:0003082!5.93e-12!61;UBERON:0002100!6.36e-11!216;UBERON:0000486!3.52e-10!82;UBERON:0000481!4.44e-10!347;UBERON:0003104!4.73e-10!238;UBERON:0009142!4.73e-10!238;UBERON:0000468!7.83e-10!659;UBERON:0001009!2.45e-09!113;UBERON:0004872!3.05e-09!84;UBERON:0000926!8.40e-09!448;UBERON:0004120!8.40e-09!448;UBERON:0006603!8.40e-09!448;UBERON:0004535!2.49e-08!110;UBERON:0002049!2.93e-08!79;UBERON:0007798!2.93e-08!79;UBERON:0000490!5.93e-08!138;UBERON:0003914!1.72e-07!118;UBERON:0001981!3.58e-07!60;UBERON:0007500!3.58e-07!60;UBERON:0004537!3.58e-07!60;UBERON:0006965!3.58e-07!60;UBERON:0000475!3.71e-07!365;UBERON:0001135!5.43e-07!15;UBERON:0001637!6.29e-07!42;UBERON:0003509!6.29e-07!42;UBERON:0004572!6.29e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;8.24e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.15e-10,122;UBERON:0000926,1.68e-10,315;UBERON:0004120,1.68e-10,315;UBERON:0006603,1.68e-10,315;UBERON:0003104,3.39e-10,160;UBERON:0009142,3.39e-10,160;UBERON:0007503,5.26e-09,78;UBERON:0002385,6.02e-09,64;UBERON:0001015,6.02e-09,64;UBERON:0000383,6.02e-09,64;UBERON:0002100,1.47e-08,199;UBERON:0007524,1.87e-08,73;UBERON:0002329,2.81e-08,71;UBERON:0003059,2.81e-08,71;UBERON:0007282,2.81e-08,71;UBERON:0004290,2.81e-08,71;UBERON:0009618,2.81e-08,71;UBERON:0003077,5.25e-08,72;UBERON:0007285,5.25e-08,72;UBERON:0005156,6.85e-08,59;UBERON:0000990,6.85e-08,59;UBERON:0001134,7.63e-08,62;UBERON:0002036,7.63e-08,62;UBERON:0003082,7.63e-08,62;UBERON:0001135,6.97e-07,15 | |||
|phase1_expression=4.54195948176392,12.631930909568,7.3296290129905,8.00586386825043,16.0905993993824,12.2127393374052,12.6649939084155,2.52687949370732,1.30592814099919,2.94880723801811,5.58240934377942,0.218441372130172,0.263766978228454,0.37129905888014,0.331397375727916,9.41255205032485,6.62963980826375,7.30310090387373,4.39139518911456,0.123121058076788,0.816002764977012,1.25381888591235,0,0.547497700291537,1.63205431473244,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.722878304769133,0.50133791063589,2.75208386025565,0.795285947051099,0,0.378139268656271,1.33037638477538,1.49319135678314,1.83370705696798,0.364295288292542,0,0,0.174129737299267,0.664789802594326,0,0,0,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0.66944122552934,0.805658634218294,0,0.732186172644509,0,2.43042584364528,0.267899184852239,0,0.225222960966644,1.53316637465883,0,0,0,0,0.436094052142534,5.4666914686485,2.27934920996244,0.397227542439656,2.0078563452417,1.06400514659507,6.72813120170769,3.20246987189115,14.0600502597781,0.311211035399766,0.808264032418128,0.817309515567294,1.51357427644931,0.576175924479999,0,1.5608003841516,0.570471821544449,1.19558944441441,0,0.485618833104395,0,0.204154171254893,0.245668634623536,0.619954687054593,2.37600571456411,10.3852110296994,3.64064544775211,8.62341770179486,0,0.625592599359821,0.554128230968366,3.95079858792754,10.7270728529657,6.30999847407706,1.58805056424029,1.79389635688862,2.56268866582281,2.33125091275518,0.300091096084402,2.88547081867629,3.09168648054755,3.35010341396862,0.843881661206331,4.57953924257634,1.7670364197088,3.40584624976508,2.42469085228218,3.19508633264953,7.55640736707302,3.39121184620975,0.193260853163297,0,0,0.853815942907168,0.662648841607426,0.929551542956147,0.621966330092223,1.7662459561294,0,3.12899064659632,8.36213219650751,1.38134921352481,3.25057549622385,1.44375896333917,0.828147600278907,0.337169380156203,1.68707720918437,1.21323370005633,0.435758888184812,1.18635309555548,0.404493924480493,0.196221465125346,0.769494313892781,0.738155454624648,1.40241773803446,3.7041661019826,7.3504355692771,0,0.982827216677626,0,0,0.614942192715568,0.514703430895577,0.109750285408626,0,0,0,0.651616610620649,0,1.44331342025273,0.115930404975077,2.7003999674239,0.721832238805369,0,0.190254152234598,0,0,0,0.468008530278475,0.148631162288728,0,0.839910640994298,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,3.4214489204541,0.205654985406647,0.600686115687835,0,0.560655421726804,0.43596006883328,0.51336800074665,2.19761916788222,3.57656445851882,0,8.24408161413099,7.28052058379563,0.257207374262142,0,1.5985330740966,1.85871391755592,1.08524321078289,4.93944202068461,0,1.06617584622764,0.791951872933429,2.1100756394171,5.22920075160176,5.69846049737725,1.2162378064119,0,0,4.55287225434007,9.18895486672911,0,1.15825045334063,1.64381058040307,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,1.50051156317903,0.813795071099207,8.94274704582471,15.1664640477587,6.30809660135739,4.21709093973768,2.70851489754947,25.0148254461583,1.03473071292505,2.65690239414175,1.65932251687533,2.95404289191482,2.93701736194111,0.343143423810856,0,0,0,0,0,1.81434175997808,2.72918588600655,2.455391572609,8.41980283299221,2.94720043288112,4.09365799253363,4.82561763430822,10.3892646511494,1.85051632563187,4.6166048581413,0.98552587216571,4.15403543346897,2.20799719073923,0.362578348774867,1.00253235151642,0,2.18147451512753,3.09554985611419,8.26083814244372,0,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0.647747748306418,4.62681758070868,1.35473218771926,4.01351819083883,0,0,0.895499018888713,0,0,0,0.656029291399411,0.650756789328606,1.13345112812495,0.27470839445503,0.082509499920588,0.574265537996172,0,4.82051789532479,0.676695028044854,0.616194468458578,0.307007349452259,0.137836572484531,0.644521469209642,0.435050081742686,0.596586391912706,1.4245125703478,0,0,0,0.10115778085555,8.83206543664843,1.5740617341532,3.485186350803,0.308033580176089,0.532306030317022,0.869932992075073,2.03856641014312,1.43124886741991,0.372158369359667,1.89827654831236,4.95638504201945,3.32667128704734,0.42793898803392,0.636406495851874,8.63443504219153,1.79872457583315,3.29444435683266,2.12062324222236,1.81964233415984,0,1.68503382495592,3.41343617362713,0.731140468893853,6.33900880540533,1.36499911407986,3.11091950298168,1.13008116620243,1.10273068709225,3.3171948762061,4.82295973779139,3.47265320560013,0.655894752046633,2.84074527747786,5.88664646389525,0.845086807596724,0.286822704408103,2.16147890228867,6.77674997814376,1.77380532035299,1.68886108238131,2.63435914367922,0.379473173765715,0.699869440489966,0,0.670302275535787,0,0.470719003883896,0,0,0.886860307073351,0,0.507447609232169,1.52927441428475,1.70894156152249,0.238231775457789,0,0.648473311192717,0,0.7931251762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| ||
|short_description=p@chr20:35176429..35176448,+ | |||
}} | }} |
Latest revision as of 13:35, 28 July 2015
Short description: | p@chr20:35176429..35176448, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35176429..35176448, + |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.97e-12 | 76 |
smooth muscle cell | 6.21e-11 | 43 |
smooth muscle myoblast | 6.21e-11 | 43 |
fat cell | 3.55e-10 | 15 |
vascular associated smooth muscle cell | 3.72e-08 | 32 |
preadipocyte | 2.72e-07 | 12 |
muscle precursor cell | 3.20e-07 | 58 |
myoblast | 3.20e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.20e-07 | 58 |
muscle cell | 4.72e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 1.15e-10 | 122 |
mesoderm | 1.68e-10 | 315 |
mesoderm-derived structure | 1.68e-10 | 315 |
presumptive mesoderm | 1.68e-10 | 315 |
mesenchyme | 3.39e-10 | 160 |
entire embryonic mesenchyme | 3.39e-10 | 160 |
epithelial vesicle | 5.26e-09 | 78 |
muscle tissue | 6.02e-09 | 64 |
musculature | 6.02e-09 | 64 |
musculature of body | 6.02e-09 | 64 |
trunk | 1.47e-08 | 199 |
dense mesenchyme tissue | 1.87e-08 | 73 |
somite | 2.81e-08 | 71 |
presomitic mesoderm | 2.81e-08 | 71 |
presumptive segmental plate | 2.81e-08 | 71 |
dermomyotome | 2.81e-08 | 71 |
trunk paraxial mesoderm | 2.81e-08 | 71 |
paraxial mesoderm | 5.25e-08 | 72 |
presumptive paraxial mesoderm | 5.25e-08 | 72 |
reproductive structure | 6.85e-08 | 59 |
reproductive system | 6.85e-08 | 59 |
skeletal muscle tissue | 7.63e-08 | 62 |
striated muscle tissue | 7.63e-08 | 62 |
myotome | 7.63e-08 | 62 |
smooth muscle tissue | 6.97e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.34e-07 | 14 |