FFCP PHASE1:Hg19::chr20:30307333..30307356,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:30307333..30307356,- to FFCP PHASE1:Hg19::chr20:30307333..30307356,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:30307333..30307356,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_at_chr20:30307333..30307356,- | |||
|id=chr20:30307333..30307356,- | |||
|ontology_enrichment_celltype=CL:0000066!1.44e-13!254;CL:0002076!2.33e-13!43;CL:0000223!4.27e-10!59;CL:0002368!4.60e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002202;3.81e-08;9!CL:0002632;3.81e-08;9!CL:0002577;2.40e-07;3!CL:0000322;6.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.33e-09,253;CL:0002202,4.80e-08,9;CL:0002632,4.80e-08,9;CL:0002577,2.48e-07,3;CL:0000322,6.17e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;5.79e-10;2!DOID:1749;1.22e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,7.28e-10,2;DOID:1749,1.04e-07,14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.62e-24;15!UBERON:0000179;1.62e-24;15!UBERON:0000463;1.62e-24;15!UBERON:0002390;8.06e-14;32!UBERON:0002193;1.04e-10;42!UBERON:0002370;2.66e-10;2!UBERON:0005058;2.66e-10;2!UBERON:0009113;2.66e-10;2!UBERON:0004821;6.54e-07;3!UBERON:0007499;6.54e-07;3!UBERON:0003215;6.54e-07;3!UBERON:0010368;6.54e-07;3!UBERON:0009911;6.54e-07;3!UBERON:0002299;6.54e-07;3!UBERON:0006524;6.54e-07;3!UBERON:0008874;6.54e-07;3!UBERON:0002169;6.54e-07;3!UBERON:0004894;6.54e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.72e-24,15;UBERON:0000179,1.72e-24,15;UBERON:0000463,1.72e-24,15;UBERON:0006554,1.12e-07,47;UBERON:0005911,1.14e-07,82;UBERON:0001008,1.76e-07,48;UBERON:0004807,5.73e-07,28;UBERON:0004821,6.17e-07,3;UBERON:0003215,6.17e-07,3;UBERON:0010368,6.17e-07,3;UBERON:0009911,6.17e-07,3;UBERON:0002299,6.17e-07,3;UBERON:0006524,6.17e-07,3;UBERON:0008874,6.17e-07,3;UBERON:0002169,6.17e-07,3;UBERON:0004894,6.17e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,2.79120467188971,0.655324116390517,1.31883489114227,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0,0,0,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.309632246632152,0,0,1.10926203050036,0,0.142169232487422,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0.605399502633369,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,1.82147644146271,0.370784442784429,0,0,0.132957960518865,0,0,0.371457501329565,0.79504962946682,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.626984899610432,0.516833518338658,1.77883131343355,1.00416183829401,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0.949265659568129,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0.98775256867763,0,0.804231779293047,0.370353780634118,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0.567100388969546,0.179117045405697,0.871901815541886,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.106727557803444,3.33440328590885,3.32870879020994,0.907170879989041,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,2.77976734060731,0.200506470303285,0.644566922551274,0,0,0,1.80479845162965,0.462092022626489,0,0,0.316654886678627,1.13733384070897,0.170093705276516,0,0,0,0.501689773854853,0.254876273045038,1.66215201785745,0.447749509444357,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0,0.082509499920588,0.574265537996172,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0.127612712494584,0.4046311234222,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,2.17781969722645,0.0941438007767792,1.29151611801369,1.68471475667626,0.886860307073351,0.229723400206959,8.62660935694688,6.88173486428138,10.8232965563091,3.57347663186684,2.46817363851717,9.07862635669804,8.64050299580984,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,0.146508179271894,0,0,0.568272293612826,0.47748896947538,0.296964680832639,0.614321404198464,0,0,0,0,0,0,0,0,0,0.123084805461069,0,2.51631383212515,1.79021174675609,0,0,2.3948309234694,0,0,0.185536196323703,0,0,0.787139999965761,0,0,1.5255219017566,0,0,0,0,0,0,1.52581736317083,0.110579259931225,0,0.219385397153973,0,0.975966209950223,0,0,0.23056390438806,0.269272933229316,0.54323685961004,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0.158936578980379,0,1.95879369790977,3.1097675715467,0,0,0,0,0.593042257361244,0.247127877893006,0.313265848516366,0.067401132980677,0,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0.569219092059585,0.138674673013139,5.20679215005393,0.391969589657511,1.82824333818845,0,0.343972064943233,0,0,0,0.0969890164884194,0.176512253383001,0,0,0,0,0.586654148204409,0.160317640503067,0.426905989478705,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0.157566364614447,0.0824158583811665,0,0,0,0,0,0,0,0,0.2249738915515,0,0.121499113316049,0,0.394028536495991,0.209818352539992,0,0,1.53532157855556,0,0,0,0,0,0,0,0.985110248992068,0,0,0,0,0.387848869084652,0,0.171086837884329,0,0.427149650270779,0.471612915298998,0.414239055347196,0,0,0.243585196761792,1.27668251554036,0,0,0,0,0.785270481251171,0,0,0,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0.0981477185010256,0.471878893390961,0.366857197043358,0,0,0,0,0.0752103283492573,0,0,0,0,0.739280431085226,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,1.4460082245969,0,0.157115589916002,1.12108865325516,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0.236664001461131,0.255640214277473,0,0.68732060563215,0.31020638566432,0,0,2.35560560676583,1.46301509978723,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.128915775947154,0.0999411559249289,0.178553938605658,1.76447435857846,2.64796510074255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0.10343299586189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| |phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,2.79120467188971,0.655324116390517,1.31883489114227,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0,0,0,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0.309632246632152,0,0,1.10926203050036,0,0.142169232487422,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0.605399502633369,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,1.82147644146271,0.370784442784429,0,0,0.132957960518865,0,0,0.371457501329565,0.79504962946682,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.626984899610432,0.516833518338658,1.77883131343355,1.00416183829401,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0.949265659568129,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0.98775256867763,0,0.804231779293047,0.370353780634118,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0.567100388969546,0.179117045405697,0.871901815541886,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.106727557803444,3.33440328590885,3.32870879020994,0.907170879989041,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,2.77976734060731,0.200506470303285,0.644566922551274,0,0,0,1.80479845162965,0.462092022626489,0,0,0.316654886678627,1.13733384070897,0.170093705276516,0,0,0,0.501689773854853,0.254876273045038,1.66215201785745,0.447749509444357,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0,0.082509499920588,0.574265537996172,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0.127612712494584,0.4046311234222,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,2.17781969722645,0.0941438007767792,1.29151611801369,1.68471475667626,0.886860307073351,0.229723400206959,8.62660935694688,6.88173486428138,10.8232965563091,3.57347663186684,2.46817363851717,9.07862635669804,8.64050299580984,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,0.146508179271894,0,0,0.568272293612826,0.47748896947538,0.296964680832639,0.614321404198464,0,0,0,0,0,0,0,0,0,0.123084805461069,0,2.51631383212515,1.79021174675609,0,0,2.3948309234694,0,0,0.185536196323703,0,0,0.787139999965761,0,0,1.5255219017566,0,0,0,0,0,0,1.52581736317083,0.110579259931225,0,0.219385397153973,0,0.975966209950223,0,0,0.23056390438806,0.269272933229316,0.54323685961004,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0.158936578980379,0,1.95879369790977,3.1097675715467,0,0,0,0,0.593042257361244,0.247127877893006,0.313265848516366,0.067401132980677,0,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0.569219092059585,0.138674673013139,5.20679215005393,0.391969589657511,1.82824333818845,0,0.343972064943233,0,0,0,0.0969890164884194,0.176512253383001,0,0,0,0,0.586654148204409,0.160317640503067,0.426905989478705,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0.157566364614447,0.0824158583811665,0,0,0,0,0,0,0,0,0.2249738915515,0,0.121499113316049,0,0.394028536495991,0.209818352539992,0,0,1.53532157855556,0,0,0,0,0,0,0,0.985110248992068,0,0,0,0,0.387848869084652,0,0.171086837884329,0,0.427149650270779,0.471612915298998,0.414239055347196,0,0,0.243585196761792,1.27668251554036,0,0,0,0,0.785270481251171,0,0,0,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0.0981477185010256,0.471878893390961,0.366857197043358,0,0,0,0,0.0752103283492573,0,0,0,0,0.739280431085226,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,1.4460082245969,0,0.157115589916002,1.12108865325516,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0.236664001461131,0.255640214277473,0,0.68732060563215,0.31020638566432,0,0,2.35560560676583,1.46301509978723,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.128915775947154,0.0999411559249289,0.178553938605658,1.76447435857846,2.64796510074255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0.10343299586189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| ||
|short_description=p@chr20:30307333..30307356,- | |||
}} | }} |
Latest revision as of 12:50, 28 July 2015
Short description: | p@chr20:30307333..30307356, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:30307333..30307356, - |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.33e-09 | 253 |
epithelial cell of tracheobronchial tree | 4.80e-08 | 9 |
epithelial cell of lower respiratory tract | 4.80e-08 | 9 |
placental epithelial cell | 2.48e-07 | 3 |
pneumocyte | 6.17e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.72e-24 | 15 |
haemolymphatic fluid | 1.72e-24 | 15 |
organism substance | 1.72e-24 | 15 |
urinary system structure | 1.12e-07 | 47 |
endo-epithelium | 1.14e-07 | 82 |
renal system | 1.76e-07 | 48 |
respiratory system epithelium | 5.73e-07 | 28 |
pulmonary alveolus epithelium | 6.17e-07 | 3 |
alveolus | 6.17e-07 | 3 |
pulmonary lobule | 6.17e-07 | 3 |
lobule | 6.17e-07 | 3 |
alveolus of lung | 6.17e-07 | 3 |
alveolar system | 6.17e-07 | 3 |
pulmonary acinus | 6.17e-07 | 3 |
alveolar sac | 6.17e-07 | 3 |
alveolar wall | 6.17e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 7.28e-10 | 2 |
squamous cell carcinoma | 1.04e-07 | 14 |