FFCP PHASE1:Hg19::chr20:20472232..20472244,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:20472232..20472244,- | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_at_chr20:20472232..20472244,- | |description=CAGE_peak_at_chr20:20472232..20472244,- | ||
|id=chr20:20472232..20472244,- | |id=chr20:20472232..20472244,- | ||
|ontology_enrichment_celltype=CL:0000990!7.55e-19!8;CL:0000128!4.05e-18!7;CL:0000126!4.05e-18!7;CL:0000127!4.05e-18!7;CL:0002453!4.05e-18!7;CL:0002319!2.15e-17!25;CL:0002605!1.61e-16!3;CL:0000047!1.68e-16!8;CL:0000451!2.53e-15!10;CL:0000453!3.76e-09!5;CL:0000540!1.67e-08!6;CL:0000031!1.67e-08!6;CL:0000404!1.67e-08!6;CL:0000840!6.28e-08!5;CL:0001029!6.28e-08!5;CL:0000243!2.71e-07!15;CL:0000125!2.71e-07!15;CL:0000030!2.71e-07!15;CL:0000339!2.71e-07!15;CL:0002622!3.24e-07!3 | |ontology_enrichment_celltype=CL:0000990!7.55e-19!8;CL:0000128!4.05e-18!7;CL:0000126!4.05e-18!7;CL:0000127!4.05e-18!7;CL:0002453!4.05e-18!7;CL:0002319!2.15e-17!25;CL:0002605!1.61e-16!3;CL:0000047!1.68e-16!8;CL:0000451!2.53e-15!10;CL:0000453!3.76e-09!5;CL:0000540!1.67e-08!6;CL:0000031!1.67e-08!6;CL:0000404!1.67e-08!6;CL:0000840!6.28e-08!5;CL:0001029!6.28e-08!5;CL:0000243!2.71e-07!15;CL:0000125!2.71e-07!15;CL:0000030!2.71e-07!15;CL:0000339!2.71e-07!15;CL:0002622!3.24e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002605;9.99e-60;3!CL:0002319;1.34e-46;25!CL:0000047;4.89e-41;2!CL:0000540;2.52e-30;6!CL:0000404;2.52e-30;6!CL:0000128;4.10e-26;7!CL:0000126;4.10e-26;7!CL:0000127;4.10e-26;7!CL:0000243;3.55e-11;15!CL:0000125;3.55e-11;15!CL:0000095;4.58e-10;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.40e-62,8;CL:0002605,1.22e-59,3;CL:0002319,1.34e-46,25;CL:0000540,2.28e-30,6;CL:0000031,2.28e-30,6;CL:0000404,2.28e-30,6;CL:0000128,4.47e-26,7;CL:0000126,4.47e-26,7;CL:0000127,4.47e-26,7;CL:0002453,4.47e-26,7;CL:0000133,1.53e-20,59;CL:0000221,6.92e-17,72;CL:0000243,3.68e-11,15;CL:0000125,3.68e-11,15;CL:0000030,3.68e-11,15;CL:0000339,3.68e-11,15;CL:0000095,4.72e-10,17;CL:0000123,4.72e-10,17 | |||
|ontology_enrichment_development_v019=CL:0000031;2.52e-30;6!CL:0000133;1.99e-15;59!CL:0000339;3.55e-11;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.43e-13!82;UBERON:0005743!8.80e-13!86;UBERON:0000073!3.03e-11!94;UBERON:0001016!3.03e-11!94;UBERON:0002791!2.26e-10!33;UBERON:0002780!4.54e-10!41;UBERON:0001890!4.54e-10!41;UBERON:0006240!4.54e-10!41;UBERON:0002020!4.96e-10!34;UBERON:0003528!4.96e-10!34;UBERON:0001893!4.96e-10!34;UBERON:0003080!8.60e-10!42;UBERON:0000956!9.88e-09!25;UBERON:0000203!9.88e-09!25;UBERON:0001869!1.44e-08!32;UBERON:0001049!2.82e-08!57;UBERON:0005068!2.82e-08!57;UBERON:0006241!2.82e-08!57;UBERON:0007135!2.82e-08!57;UBERON:0002616!6.24e-08!59;UBERON:0000955!1.17e-07!69;UBERON:0006238!1.17e-07!69;UBERON:0003056!1.20e-07!61;UBERON:0003075!5.47e-07!86;UBERON:0007284!5.47e-07!86 | |ontology_enrichment_uberon=UBERON:0001017!1.43e-13!82;UBERON:0005743!8.80e-13!86;UBERON:0000073!3.03e-11!94;UBERON:0001016!3.03e-11!94;UBERON:0002791!2.26e-10!33;UBERON:0002780!4.54e-10!41;UBERON:0001890!4.54e-10!41;UBERON:0006240!4.54e-10!41;UBERON:0002020!4.96e-10!34;UBERON:0003528!4.96e-10!34;UBERON:0001893!4.96e-10!34;UBERON:0003080!8.60e-10!42;UBERON:0000956!9.88e-09!25;UBERON:0000203!9.88e-09!25;UBERON:0001869!1.44e-08!32;UBERON:0001049!2.82e-08!57;UBERON:0005068!2.82e-08!57;UBERON:0006241!2.82e-08!57;UBERON:0007135!2.82e-08!57;UBERON:0002616!6.24e-08!59;UBERON:0000955!1.17e-07!69;UBERON:0006238!1.17e-07!69;UBERON:0003056!1.20e-07!61;UBERON:0003075!5.47e-07!86;UBERON:0007284!5.47e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.51e-12;25!UBERON:0000203;1.51e-12;25!UBERON:0002791;1.29e-09;32!UBERON:0001869;1.29e-09;32!UBERON:0003528;1.30e-09;34!UBERON:0002020;1.30e-09;34!UBERON:0001893;1.30e-09;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.63e-19,81;UBERON:0001016,4.37e-17,89;UBERON:0000956,1.54e-12,25;UBERON:0000203,1.54e-12,25;UBERON:0004121,5.90e-11,171;UBERON:0000924,5.90e-11,171;UBERON:0006601,5.90e-11,171;UBERON:0002791,5.88e-10,32;UBERON:0001869,5.88e-10,32;UBERON:0003528,2.08e-09,34;UBERON:0002020,2.08e-09,34;UBERON:0001893,2.08e-09,34;UBERON:0003056,4.55e-08,61;UBERON:0002780,6.84e-08,41;UBERON:0001890,6.84e-08,41;UBERON:0003080,6.84e-08,41;UBERON:0006240,6.84e-08,41 | |||
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|short_description=p@chr20:20472232..20472244,- | |short_description=p@chr20:20472232..20472244,- | ||
}} | }} |
Latest revision as of 12:21, 28 July 2015
Short description: | p@chr20:20472232..20472244, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:20472232..20472244, - |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.40e-62 | 8 |
astrocyte of the cerebral cortex | 1.22e-59 | 3 |
neural cell | 1.34e-46 | 25 |
neuron | 2.28e-30 | 6 |
neuroblast | 2.28e-30 | 6 |
electrically signaling cell | 2.28e-30 | 6 |
oligodendrocyte | 4.47e-26 | 7 |
macroglial cell | 4.47e-26 | 7 |
astrocyte | 4.47e-26 | 7 |
oligodendrocyte precursor cell | 4.47e-26 | 7 |
neurectodermal cell | 1.53e-20 | 59 |
ectodermal cell | 6.92e-17 | 72 |
glial cell (sensu Vertebrata) | 3.68e-11 | 15 |
glial cell | 3.68e-11 | 15 |
glioblast | 3.68e-11 | 15 |
glioblast (sensu Vertebrata) | 3.68e-11 | 15 |
neuron associated cell | 4.72e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 4.72e-10 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.63e-19 | 81 |
nervous system | 4.37e-17 | 89 |
cerebral cortex | 1.54e-12 | 25 |
pallium | 1.54e-12 | 25 |
ectoderm-derived structure | 5.90e-11 | 171 |
ectoderm | 5.90e-11 | 171 |
presumptive ectoderm | 5.90e-11 | 171 |
regional part of telencephalon | 5.88e-10 | 32 |
cerebral hemisphere | 5.88e-10 | 32 |
brain grey matter | 2.08e-09 | 34 |
gray matter | 2.08e-09 | 34 |
telencephalon | 2.08e-09 | 34 |
pre-chordal neural plate | 4.55e-08 | 61 |
regional part of forebrain | 6.84e-08 | 41 |
forebrain | 6.84e-08 | 41 |
anterior neural tube | 6.84e-08 | 41 |
future forebrain | 6.84e-08 | 41 |