FFCP PHASE1:Hg19::chr1:860201..860213,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:860201..860213,- | |||
|description=CAGE_peak_at_chr1:860201..860213,- | |description=CAGE_peak_at_chr1:860201..860213,- | ||
|id=chr1:860201..860213,- | |id=chr1:860201..860213,- | ||
|ontology_enrichment_celltype=CL:0002334!1.49e-08!12 | |ontology_enrichment_celltype=CL:0002334!1.49e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.31e-36;12!CL:0002580;2.05e-28;3!CL:0002579;5.67e-28;3!CL:0002581;2.50e-10;1!CL:0000306;6.24e-10;4!CL:0002222;6.24e-10;4!CL:0002224;6.24e-10;4!CL:0002620;8.31e-10;23!CL:0000057;6.71e-08;73 | |ontology_enrichment_celltype_v019=CL:0002334;1.31e-36;12!CL:0002580;2.05e-28;3!CL:0002579;5.67e-28;3!CL:0002581;2.50e-10;1!CL:0000306;6.24e-10;4!CL:0002222;6.24e-10;4!CL:0002224;6.24e-10;4!CL:0002620;8.31e-10;23!CL:0000057;6.71e-08;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0002334,6.58e-37,12;CL:0002580,1.30e-28,3;CL:0002579,2.99e-28,3;CL:0000057,3.16e-18,76;CL:0002581,2.28e-10,1;CL:0002620,7.29e-10,23;CL:0000306,7.48e-10,4;CL:0002222,7.48e-10,4;CL:0002224,7.48e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0010115;2.50e-10;1 | |ontology_enrichment_development_v019=UBERON:0010115;2.50e-10;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;2.83e-08;5!DOID:450;2.83e-08;5!DOID:66;2.83e-08;5!DOID:423;2.83e-08;5!DOID:0080000;2.83e-08;5!DOID:11722;2.83e-08;5 | |ontology_enrichment_disease_v019=DOID:17;2.83e-08;5!DOID:450;2.83e-08;5!DOID:66;2.83e-08;5!DOID:423;2.83e-08;5!DOID:0080000;2.83e-08;5!DOID:11722;2.83e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,2.36e-08,5;DOID:450,2.36e-08,5;DOID:66,2.36e-08,5;DOID:423,2.36e-08,5;DOID:0080000,2.36e-08,5;DOID:11722,2.36e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!7.34e-07!6;UBERON:0002358!7.34e-07!6;UBERON:0003684!7.34e-07!6;UBERON:0001178!7.34e-07!6;UBERON:0000310!7.67e-07!10 | |ontology_enrichment_uberon=UBERON:0003688!7.34e-07!6;UBERON:0002358!7.34e-07!6;UBERON:0003684!7.34e-07!6;UBERON:0001178!7.34e-07!6;UBERON:0000310!7.67e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;9.95e-25;6!UBERON:0002358;9.95e-25;6!UBERON:0003684;9.95e-25;6!UBERON:0001178;9.95e-25;6!UBERON:0004457;1.39e-16;9!UBERON:0000042;1.39e-16;9!UBERON:0000310;5.79e-15;10!UBERON:0001443;1.27e-13;11!UBERON:0002363;2.50e-10;1!UBERON:0010077;6.24e-10;4!UBERON:0005389;6.24e-10;4!UBERON:0000484;6.24e-10;4!UBERON:0000965;6.24e-10;4!UBERON:0001803;6.24e-10;4 | |ontology_enrichment_uberon_v019=UBERON:0003688;9.95e-25;6!UBERON:0002358;9.95e-25;6!UBERON:0003684;9.95e-25;6!UBERON:0001178;9.95e-25;6!UBERON:0004457;1.39e-16;9!UBERON:0000042;1.39e-16;9!UBERON:0000310;5.79e-15;10!UBERON:0001443;1.27e-13;11!UBERON:0002363;2.50e-10;1!UBERON:0010077;6.24e-10;4!UBERON:0005389;6.24e-10;4!UBERON:0000484;6.24e-10;4!UBERON:0000965;6.24e-10;4!UBERON:0001803;6.24e-10;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.76e-25,6;UBERON:0002358,5.76e-25,6;UBERON:0003684,5.76e-25,6;UBERON:0001178,5.76e-25,6;UBERON:0000310,4.84e-15,10;UBERON:0001443,1.08e-13,11;UBERON:0004457,1.31e-12,12;UBERON:0000042,1.31e-12,12;UBERON:0002363,4.33e-10,1;UBERON:0007645,4.33e-10,1;UBERON:0007647,4.33e-10,1;UBERON:0010115,4.33e-10,1;UBERON:0010077,7.48e-10,4;UBERON:0005389,7.48e-10,4;UBERON:0000484,7.48e-10,4;UBERON:0002546,7.48e-10,4;UBERON:0000965,7.48e-10,4;UBERON:0001803,7.48e-10,4;UBERON:0003073,7.48e-10,4;UBERON:0005426,7.48e-10,4 | |||
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| ||
|short_description=p@chr1:860201..860213,- | |short_description=p@chr1:860201..860213,- | ||
}} | }} |
Latest revision as of 10:51, 28 July 2015
Short description: | p@chr1:860201..860213, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:860201..860213, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 6.58e-37 | 12 |
preadipocyte of the breast | 1.30e-28 | 3 |
omentum preadipocyte | 2.99e-28 | 3 |
fibroblast | 3.16e-18 | 76 |
perirenal preadipocyte | 2.28e-10 | 1 |
skin fibroblast | 7.29e-10 | 23 |
crystallin accumulating cell | 7.48e-10 | 4 |
vertebrate lens cell | 7.48e-10 | 4 |
lens epithelial cell | 7.48e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.76e-25 | 6 |
peritoneum | 5.76e-25 | 6 |
abdominal cavity | 5.76e-25 | 6 |
visceral peritoneum | 5.76e-25 | 6 |
breast | 4.84e-15 | 10 |
chest | 1.08e-13 | 11 |
cavity lining | 1.31e-12 | 12 |
serous membrane | 1.31e-12 | 12 |
dura mater | 4.33e-10 | 1 |
future meninx | 4.33e-10 | 1 |
ectomeninx | 4.33e-10 | 1 |
future dura mater | 4.33e-10 | 1 |
cuboidal epithelium | 7.48e-10 | 4 |
transparent eye structure | 7.48e-10 | 4 |
simple cuboidal epithelium | 7.48e-10 | 4 |
cranial placode | 7.48e-10 | 4 |
lens of camera-type eye | 7.48e-10 | 4 |
epithelium of lens | 7.48e-10 | 4 |
lens placode | 7.48e-10 | 4 |
lens vesicle | 7.48e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.36e-08 | 5 |
myotonic disease | 2.36e-08 | 5 |
muscle tissue disease | 2.36e-08 | 5 |
myopathy | 2.36e-08 | 5 |
muscular disease | 2.36e-08 | 5 |
myotonic dystrophy | 2.36e-08 | 5 |