FFCP PHASE1:Hg19::chr1:46797583..46797614,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:46797583..46797614,- | |||
|coexpression_cluster_id=C117 | |||
|description=CAGE_peak_at_chr1:46797583..46797614,- | |description=CAGE_peak_at_chr1:46797583..46797614,- | ||
|id=chr1:46797583..46797614,- | |id=chr1:46797583..46797614,- | ||
|ontology_enrichment_celltype=CL:1000497!2.33e-23!18;CL:0002518!2.33e-23!18;CL:1000507!6.21e-19!12;CL:1000494!6.21e-19!12;CL:1000449!1.97e-17!16;CL:0000945!1.61e-14!24;CL:0000826!1.61e-14!24;CL:0002681!2.25e-13!13;CL:0002584!2.25e-13!13;CL:0000817!5.11e-12!3;CL:0000239!7.73e-12!3;CL:1000615!7.73e-12!3;CL:0002306!7.73e-12!3;CL:0000039!6.69e-09!7;CL:0000586!6.69e-09!7;CL:0000785!2.16e-08!2;CL:0000955!2.16e-08!2;CL:0000818!2.16e-08!2;CL:0000954!2.16e-08!2;CL:0000816!2.16e-08!2;CL:0000838!2.72e-08!52;CL:0000542!4.35e-08!53;CL:0000051!4.35e-08!53 | |ontology_enrichment_celltype=CL:1000497!2.33e-23!18;CL:0002518!2.33e-23!18;CL:1000507!6.21e-19!12;CL:1000494!6.21e-19!12;CL:1000449!1.97e-17!16;CL:0000945!1.61e-14!24;CL:0000826!1.61e-14!24;CL:0002681!2.25e-13!13;CL:0002584!2.25e-13!13;CL:0000817!5.11e-12!3;CL:0000239!7.73e-12!3;CL:1000615!7.73e-12!3;CL:0002306!7.73e-12!3;CL:0000039!6.69e-09!7;CL:0000586!6.69e-09!7;CL:0000785!2.16e-08!2;CL:0000955!2.16e-08!2;CL:0000818!2.16e-08!2;CL:0000954!2.16e-08!2;CL:0000816!2.16e-08!2;CL:0000838!2.72e-08!52;CL:0000542!4.35e-08!53;CL:0000051!4.35e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0000650;3.54e-24;2!CL:1000500;3.54e-24;2!CL:1000618;3.54e-24;2!CL:1001318;3.54e-24;2!CL:0002173;3.54e-24;2!CL:0000945;2.83e-17;24!CL:0000313;1.61e-13;1!CL:0000817;7.68e-13;1!CL:0000669;1.35e-12;4!CL:1000497;3.32e-11;17!CL:0002518;3.32e-11;17!CL:1000746;1.40e-07;7!CL:1000612;1.40e-07;7!CL:0000159;2.15e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000650,3.76e-24,2;CL:1000500,3.76e-24,2;CL:1000618,3.76e-24,2;CL:1001318,3.76e-24,2;CL:0002173,3.76e-24,2;CL:0000945,3.08e-17,24;CL:0000826,3.08e-17,24;CL:0000313,1.61e-13,1;CL:0000669,1.39e-12,4;CL:1000497,3.23e-11,17;CL:0002518,3.23e-11,17;CL:0000838,1.84e-10,52;CL:0000542,2.99e-10,53;CL:0000051,2.99e-10,53;CL:1000746,1.43e-07,7;CL:1000612,1.43e-07,7;CL:0000159,2.15e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2152;1.61e-13;1!DOID:4468;2.50e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.61e-13,1;DOID:4468,2.74e-07,2 | |||
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|short_description=p@chr1:46797583..46797614,- | |short_description=p@chr1:46797583..46797614,- | ||
}} | }} |
Latest revision as of 08:48, 28 July 2015
Short description: | p@chr1:46797583..46797614, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:46797583..46797614, - |
Coexpression cluster: | C117_serous_clear_kidney_neuroectodermal_mesothelioma_endometrial_Intestinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 3.76e-24 | 2 |
kidney interstitial cell | 3.76e-24 | 2 |
juxtaglomerular complex cell | 3.76e-24 | 2 |
renal interstitial pericyte | 3.76e-24 | 2 |
extraglomerular mesangial cell | 3.76e-24 | 2 |
lymphocyte of B lineage | 3.08e-17 | 24 |
pro-B cell | 3.08e-17 | 24 |
serous secreting cell | 1.61e-13 | 1 |
pericyte cell | 1.39e-12 | 4 |
kidney cell | 3.23e-11 | 17 |
kidney epithelial cell | 3.23e-11 | 17 |
lymphoid lineage restricted progenitor cell | 1.84e-10 | 52 |
lymphocyte | 2.99e-10 | 53 |
common lymphoid progenitor | 2.99e-10 | 53 |
glomerular cell | 1.43e-07 | 7 |
kidney corpuscule cell | 1.43e-07 | 7 |
seromucus secreting cell | 2.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 3.76e-24 | 2 |
abdominal segment connective tissue | 3.76e-24 | 2 |
trunk connective tissue | 3.76e-24 | 2 |
interstitial tissue | 3.76e-24 | 2 |
extraglomerular mesangium | 3.76e-24 | 2 |
kidney interstitium | 3.76e-24 | 2 |
juxtaglomerular apparatus | 3.76e-24 | 2 |
mesangium | 3.76e-24 | 2 |
epithelium of female gonad | 1.61e-13 | 1 |
stroma | 1.39e-12 | 4 |
intraembryonic coelom | 2.61e-09 | 12 |
primitive nephron | 1.43e-07 | 7 |
renal glomerulus | 1.43e-07 | 7 |
renal corpuscle | 1.43e-07 | 7 |
glomerular capsule | 1.43e-07 | 7 |
metanephric mesenchyme | 1.43e-07 | 7 |
glomerular tuft | 1.43e-07 | 7 |
S-shaped body | 1.43e-07 | 7 |
renal vesicle | 1.43e-07 | 7 |
comma-shaped body | 1.43e-07 | 7 |
kidney | 2.10e-07 | 26 |
kidney mesenchyme | 2.10e-07 | 26 |
upper urinary tract | 2.10e-07 | 26 |
kidney rudiment | 2.10e-07 | 26 |
kidney field | 2.10e-07 | 26 |
epithelium of gonad | 2.15e-07 | 2 |
mesonephric epithelium | 9.94e-07 | 8 |
mesonephric tubule | 9.94e-07 | 8 |
nephric duct | 9.94e-07 | 8 |
renal duct | 9.94e-07 | 8 |
mesonephric duct | 9.94e-07 | 8 |
pronephric duct | 9.94e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.61e-13 | 1 |
clear cell adenocarcinoma | 2.74e-07 | 2 |