FFCP PHASE1:Hg19::chr1:43429987..43429993,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:43429987..43429993,+
|short_description=p@chr1:43429987..43429993,+
|description=CAGE_peak_at_chr1:43429987..43429993,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:43429987..43429993,+ | |||
|description=CAGE_peak_at_chr1:43429987..43429993,+ | |||
|id=chr1:43429987..43429993,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.50e-12!254;CL:0002368!2.21e-08!13;CL:0002202!1.34e-07!9;CL:0002632!1.34e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.88e-22;3!CL:0002202;4.36e-20;9!CL:0002632;4.36e-20;9!CL:0002368;1.46e-19;13!CL:0002328;1.10e-10;3!CL:1001319;9.10e-09;1!CL:1000600;9.10e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.46e-22,3;CL:0000069,1.46e-22,3;CL:0000307,1.46e-22,3;CL:0000377,1.46e-22,3;CL:0002202,4.83e-20,9;CL:0002632,4.83e-20,9;CL:0002368,1.38e-19,13;CL:0002328,1.48e-10,3;CL:0002076,7.22e-10,42;CL:1001319,7.56e-09,1;CL:1000600,7.56e-09,1;CL:0000223,1.25e-08,58;CL:0000076,7.89e-08,63 | |||
|ontology_enrichment_development_v019=CL:0000377;1.88e-22;3!UBERON:0005425;2.20e-08;1 | |||
|ontology_enrichment_disease=DOID:162!2.88e-10!235;DOID:14566!6.16e-10!239;DOID:305!8.00e-10!106;DOID:0050687!9.81e-09!143;DOID:1749!5.50e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.54e-18;14!DOID:1036;7.29e-09;8!DOID:8552;2.20e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.01e-18,14;DOID:1036,5.74e-09,8;DOID:8552,1.27e-08,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;5.44e-12;15!UBERON:0001558;5.44e-12;15!UBERON:0004815;1.10e-10;3!UBERON:0002031;1.10e-10;3!UBERON:0003126;6.15e-10;7!UBERON:0001005;6.15e-10;7!UBERON:0004645;9.10e-09;1!UBERON:0001256;9.10e-09;1!UBERON:0001259;9.10e-09;1!UBERON:0000941;2.20e-08;1!UBERON:0000997;2.20e-08;1!UBERON:0001282;2.20e-08;1!UBERON:0001785;2.20e-08;1!UBERON:0002464;2.20e-08;1!UBERON:0004904;2.20e-08;1!UBERON:0005056;2.20e-08;1!UBERON:0009842;2.20e-08;1!UBERON:0003704;2.20e-08;1!UBERON:0001021;2.20e-08;1!UBERON:0004176;2.20e-08;1!UBERON:0001171;2.20e-08;1!UBERON:0001172;2.20e-08;1!UBERON:0003343;3.66e-08;4!UBERON:0004785;3.66e-08;4!UBERON:0002185;9.69e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,5.77e-12,15;UBERON:0001558,5.77e-12,15;UBERON:0004815,1.48e-10,3;UBERON:0002031,1.48e-10,3;UBERON:0003126,5.54e-10,7;UBERON:0001005,5.54e-10,7;UBERON:0004645,7.56e-09,1;UBERON:0001256,7.56e-09,1;UBERON:0001259,7.56e-09,1;UBERON:0000941,1.98e-08,1;UBERON:0001785,1.98e-08,1;UBERON:0002464,1.98e-08,1;UBERON:0004904,1.98e-08,1;UBERON:0001021,1.98e-08,1;UBERON:0003902,1.98e-08,1;UBERON:0005425,1.98e-08,1;UBERON:0000997,2.13e-08,1;UBERON:0005056,2.13e-08,1;UBERON:0001282,2.29e-08,1;UBERON:0009842,2.29e-08,1;UBERON:0003704,2.29e-08,1;UBERON:0001171,2.29e-08,1;UBERON:0001172,2.29e-08,1;UBERON:0003343,4.88e-08,4;UBERON:0004785,4.88e-08,4 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,3.67768489791571,0.90361775633475,1.10926203050036,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0.334231370655521,0,0,0.270803863765016,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0.364295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.872188104285069,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0.505008341862199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.55146986366197,0.653638332277218,0,0.404493924480493,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,0.502644862058154,0.462942225792648,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.626909658919938,0.581267877027924,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.492762936082855,0,0,0,0.200506470303285,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0,0,1.31555925987561,0.522870902049801,0.512900250232778,0.656029291399411,0,0.103041011647722,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,1.53135254993501,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0.354761064070598,0.211107635297664,0,0,0,1.63577591633371,2.01090682660736,2.17781969722645,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890894042497916,0.614321404198464,0,0,0,0.988823245360557,0.211125408127993,0.19924798825107,0.276283915531148,0.251932747854276,0.20453736500431,0.369254416383208,0.311039587661807,0.539210106883961,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,2.27586896570999,0.254253650292766,0.709163045303809,0.344743373241465,0,0,0.885741385813839,0,1.52581736317083,0,0,0,0.21787692703798,0,0,1.36730467016401,0,0,0.108647371922008,0.638002319463839,0,0,0,0,1.66211681900156,0.225595660617181,0.19606253431774,0,1.70778359451767,3.81447789552909,0.210998064528027,0,0,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0.234264445725339,0.182454789215666,0.19566461893209,0,0,0,0.61214552326098,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,1.37189356380129,2.35059857767087,0,0,0.483781656445426,0.219267951258557,0.328461828212837,0.0969890164884194,0.0882561266915003,0.225980740780532,0.137041924646751,0.19871461170299,0.0633107959558787,0.195551382734803,0.240476460754601,0.213452994739353,0,0.144090417154106,0,0,0.288109595976299,0.124252535565433,0.471388069233591,0.271808412147228,0.523014231561666,0.407992870545287,0.288950589901519,0.600420288709789,0.136905378891993,0,0,0.788662062837943,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,4.10462603746695,0.170388021785422,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,5.10673006216145,0,0,0,0,0,0.886068179966986,0,0,0.573409195690071,0.110929051536852,0,0,0.37494122388632,0.151649117541648,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0.380805212168795,0,0.545545977607678,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0.428883182749851,0,0.680117776536817,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0,0,0.168942440653073,0.512483037175893,0.345430341731199,0,0.138258436151731,0,0.132864840313363,0,1.31043939538565,0.245772908753719,0.633936370075881,0.39997479170986,0,0.344429959321631,0.567515953566836,0.184105950251841,0.979156554036111,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0.957803154342908,0.615349092722265,0,0.138314504928436,0,1.42769420259154,0.490738592505128,0,1.10057159113007,2.07946199070609,0,0.690359926060101,0,0,0,0,0.261906694481422,0.49131575253029,0.739280431085226,0.135075169236789,0,0,0,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0.177404740325278,0,0.342976018874837,0,0.131545547125698,0,0.889851215136553,0.078493092850514,0.314231179832004,0,0,0.215927591218621,0.9555033757741,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0,0,0,0.196300467230486,0,0,0,0,0,0,0.198950775161368,0,0,0,0.150962843566674,0,0.218559560503957,0,0.245148321753905,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0.71421575442263,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0.546327859818478,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.143444410785353,0.332660356546013,2.52350132694021,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,3.67768489791571,0.90361775633475,1.10926203050036,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0.334231370655521,0,0,0.270803863765016,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0.364295288292542,1.48313777113772,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.872188104285069,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0.505008341862199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0.241011029883482,0.55146986366197,0.653638332277218,0,0.404493924480493,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,0.502644862058154,0.462942225792648,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.626909658919938,0.581267877027924,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.492762936082855,0,0,0,0.200506470303285,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0,0,1.31555925987561,0.522870902049801,0.512900250232778,0.656029291399411,0,0.103041011647722,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,1.53135254993501,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0.354761064070598,0.211107635297664,0,0,0,1.63577591633371,2.01090682660736,2.17781969722645,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890894042497916,0.614321404198464,0,0,0,0.988823245360557,0.211125408127993,0.19924798825107,0.276283915531148,0.251932747854276,0.20453736500431,0.369254416383208,0.311039587661807,0.539210106883961,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,2.27586896570999,0.254253650292766,0.709163045303809,0.344743373241465,0,0,0.885741385813839,0,1.52581736317083,0,0,0,0.21787692703798,0,0,1.36730467016401,0,0,0.108647371922008,0.638002319463839,0,0,0,0,1.66211681900156,0.225595660617181,0.19606253431774,0,1.70778359451767,3.81447789552909,0.210998064528027,0,0,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0.234264445725339,0.182454789215666,0.19566461893209,0,0,0,0.61214552326098,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,1.37189356380129,2.35059857767087,0,0,0.483781656445426,0.219267951258557,0.328461828212837,0.0969890164884194,0.0882561266915003,0.225980740780532,0.137041924646751,0.19871461170299,0.0633107959558787,0.195551382734803,0.240476460754601,0.213452994739353,0,0.144090417154106,0,0,0.288109595976299,0.124252535565433,0.471388069233591,0.271808412147228,0.523014231561666,0.407992870545287,0.288950589901519,0.600420288709789,0.136905378891993,0,0,0.788662062837943,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,4.10462603746695,0.170388021785422,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,5.10673006216145,0,0,0,0,0,0.886068179966986,0,0,0.573409195690071,0.110929051536852,0,0,0.37494122388632,0.151649117541648,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0.380805212168795,0,0.545545977607678,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0.428883182749851,0,0.680117776536817,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0,0,0.168942440653073,0.512483037175893,0.345430341731199,0,0.138258436151731,0,0.132864840313363,0,1.31043939538565,0.245772908753719,0.633936370075881,0.39997479170986,0,0.344429959321631,0.567515953566836,0.184105950251841,0.979156554036111,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0.957803154342908,0.615349092722265,0,0.138314504928436,0,1.42769420259154,0.490738592505128,0,1.10057159113007,2.07946199070609,0,0.690359926060101,0,0,0,0,0.261906694481422,0.49131575253029,0.739280431085226,0.135075169236789,0,0,0,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0.177404740325278,0,0.342976018874837,0,0.131545547125698,0,0.889851215136553,0.078493092850514,0.314231179832004,0,0,0.215927591218621,0.9555033757741,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0,0,0,0.196300467230486,0,0,0,0,0,0,0.198950775161368,0,0,0,0.150962843566674,0,0.218559560503957,0,0.245148321753905,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0.71421575442263,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0.546327859818478,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.143444410785353,0.332660356546013,2.52350132694021,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr1:43429987..43429993,+ | |||
}} | }} |
Latest revision as of 08:23, 28 July 2015
Short description: | p@chr1:43429987..43429993, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:43429987..43429993, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.46e-22 | 3 |
branched duct epithelial cell | 1.46e-22 | 3 |
tracheal epithelial cell | 1.46e-22 | 3 |
tracheoblast | 1.46e-22 | 3 |
epithelial cell of tracheobronchial tree | 4.83e-20 | 9 |
epithelial cell of lower respiratory tract | 4.83e-20 | 9 |
respiratory epithelial cell | 1.38e-19 | 13 |
bronchial epithelial cell | 1.48e-10 | 3 |
endo-epithelial cell | 7.22e-10 | 42 |
bladder cell | 7.56e-09 | 1 |
lower urinary tract cell | 7.56e-09 | 1 |
endodermal cell | 1.25e-08 | 58 |
squamous epithelial cell | 7.89e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 5.77e-12 | 15 |
lower respiratory tract | 5.77e-12 | 15 |
lower respiratory tract epithelium | 1.48e-10 | 3 |
epithelium of bronchus | 1.48e-10 | 3 |
trachea | 5.54e-10 | 7 |
respiratory airway | 5.54e-10 | 7 |
urinary bladder urothelium | 7.56e-09 | 1 |
wall of urinary bladder | 7.56e-09 | 1 |
mucosa of urinary bladder | 7.56e-09 | 1 |
cranial nerve II | 1.98e-08 | 1 |
cranial nerve | 1.98e-08 | 1 |
nerve trunk | 1.98e-08 | 1 |
nerve connecting eye with brain | 1.98e-08 | 1 |
nerve | 1.98e-08 | 1 |
retinal neural layer | 1.98e-08 | 1 |
presumptive neural retina | 1.98e-08 | 1 |
mammalian vulva | 2.13e-08 | 1 |
external female genitalia | 2.13e-08 | 1 |
intralobular bile duct | 2.29e-08 | 1 |
acinus | 2.29e-08 | 1 |
intrahepatic bile duct | 2.29e-08 | 1 |
portal lobule | 2.29e-08 | 1 |
hepatic acinus | 2.29e-08 | 1 |
mucosa of oral region | 4.88e-08 | 4 |
respiratory system mucosa | 4.88e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.01e-18 | 14 |
chronic leukemia | 5.74e-09 | 8 |
chronic myeloid leukemia | 1.27e-08 | 1 |