FFCP PHASE1:Hg19::chr1:244217279..244217295,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_AK310634_5end | |||
|cluster_id=chr1:244217279..244217295,+ | |||
|coexpression_cluster_id=C2575 | |||
|description=CAGE_peak_1_at_AK310634_5end | |||
|id=chr1:244217279..244217295,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;8.29e-22;6!CL:0000404;8.29e-22;6!CL:0002319;1.23e-08;25!CL:0000047;2.77e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.99e-28,8;CL:0000540,7.19e-22,6;CL:0000031,7.19e-22,6;CL:0000404,7.19e-22,6;CL:0002319,1.19e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0006215;9.28e-44;3!CL:0000031;8.29e-22;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.55e-29!82;UBERON:0005743!1.23e-28!86;UBERON:0000073!5.90e-28!94;UBERON:0001016!5.90e-28!94;UBERON:0001049!2.04e-26!57;UBERON:0005068!2.04e-26!57;UBERON:0006241!2.04e-26!57;UBERON:0007135!2.04e-26!57;UBERON:0000955!1.28e-24!69;UBERON:0006238!1.28e-24!69;UBERON:0002616!1.88e-23!59;UBERON:0003080!3.60e-22!42;UBERON:0002619!7.86e-22!22;UBERON:0001893!9.42e-22!34;UBERON:0000956!6.26e-21!25;UBERON:0000203!6.26e-21!25;UBERON:0002780!1.02e-20!41;UBERON:0001890!1.02e-20!41;UBERON:0006240!1.02e-20!41;UBERON:0003075!1.68e-20!86;UBERON:0007284!1.68e-20!86;UBERON:0002791!2.36e-20!33;UBERON:0002020!1.17e-19!34;UBERON:0003528!1.17e-19!34;UBERON:0001869!2.15e-19!32;UBERON:0002346!3.97e-19!90;UBERON:0001950!1.46e-18!20;UBERON:0003056!5.78e-17!61;UBERON:0007023!8.24e-14!115;UBERON:0000153!1.60e-13!129;UBERON:0007811!1.60e-13!129;UBERON:0000033!5.63e-13!123;UBERON:0004121!1.41e-12!169;UBERON:0000924!5.18e-12!173;UBERON:0006601!5.18e-12!173;UBERON:0000349!3.42e-10!5;UBERON:0001871!5.04e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.83e-22;6!UBERON:0002680;4.46e-15;9!UBERON:0001895;4.46e-15;9!UBERON:0004733;1.84e-11;12!UBERON:0002028;1.84e-11;12!UBERON:0004732;1.27e-10;13!UBERON:0001016;8.22e-09;83!UBERON:0000955;2.35e-07;68!UBERON:0000922;4.65e-07;49!UBERON:0000073;6.59e-07;53!UBERON:0002616;6.59e-07;53!UBERON:0001950;9.68e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.64e-22,6;UBERON:0006215,2.64e-22,6;UBERON:0001016,5.24e-21,89;UBERON:0001017,1.26e-19,81;UBERON:0002680,4.26e-15,9;UBERON:0001895,4.26e-15,9;UBERON:0010092,4.26e-15,9;UBERON:0004733,1.78e-11,12;UBERON:0002028,1.78e-11,12;UBERON:0007277,1.78e-11,12;UBERON:0004732,1.23e-10,13;UBERON:0004121,1.62e-10,171;UBERON:0000924,1.62e-10,171;UBERON:0006601,1.62e-10,171;UBERON:0000955,1.50e-09,68;UBERON:0006238,1.50e-09,68;UBERON:0000073,2.44e-09,53;UBERON:0002616,2.44e-09,53;UBERON:0003076,2.71e-09,15;UBERON:0003057,2.71e-09,15;UBERON:0011216,2.86e-09,223;UBERON:0001049,7.86e-09,56;UBERON:0005068,7.86e-09,56;UBERON:0006241,7.86e-09,56;UBERON:0007135,7.86e-09,56;UBERON:0001950,9.87e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0.587237189370939,0.764546456250458,0,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0,0,1.30139853857622,6.18631050222156,4.85797169469611,1.91381625495949,0.749007023947182,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,3.99227596002388,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,15.2581736317083,4.97606669690511,11.8219047581419,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.123563938946503,0,0.067401132980677,0.802577647298789,0.234264445725339,0.364909578431332,0,0,0,0,7.95789180239274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176512253383001,0,0,0,0.443175571691151,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.425246896606173,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.625954653532499,0,0.332787154610557,0.124192805882767,0.138348634936231,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0,0.276516872303462,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,1.15104934173287,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.615349092722265,9.57872445642529,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.413373593002368,0.253663240775627,4.37579847214576,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0.0657727735628491,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,1.79055697645231,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.339957450954573,6.10890966476528,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.803892390468535,0,0.20686599172379,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@AK310634 | |||
}} |
Latest revision as of 05:55, 28 July 2015
Short description: | p1@AK310634 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK310634_5end |
Coexpression cluster: | C2575_cerebellum_Neurons_occipital_duodenum_temporal_parietal_brain |
Association with transcript: | -12bp_to_AK310634_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.99e-28 | 8 |
neuron | 7.19e-22 | 6 |
neuroblast | 7.19e-22 | 6 |
electrically signaling cell | 7.19e-22 | 6 |
neural cell | 1.19e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.64e-22 | 6 |
rhombic lip | 2.64e-22 | 6 |
nervous system | 5.24e-21 | 89 |
central nervous system | 1.26e-19 | 81 |
regional part of metencephalon | 4.26e-15 | 9 |
metencephalon | 4.26e-15 | 9 |
future metencephalon | 4.26e-15 | 9 |
segmental subdivision of hindbrain | 1.78e-11 | 12 |
hindbrain | 1.78e-11 | 12 |
presumptive hindbrain | 1.78e-11 | 12 |
segmental subdivision of nervous system | 1.23e-10 | 13 |
ectoderm-derived structure | 1.62e-10 | 171 |
ectoderm | 1.62e-10 | 171 |
presumptive ectoderm | 1.62e-10 | 171 |
brain | 1.50e-09 | 68 |
future brain | 1.50e-09 | 68 |
regional part of nervous system | 2.44e-09 | 53 |
regional part of brain | 2.44e-09 | 53 |
posterior neural tube | 2.71e-09 | 15 |
chordal neural plate | 2.71e-09 | 15 |
organ system subdivision | 2.86e-09 | 223 |
neural tube | 7.86e-09 | 56 |
neural rod | 7.86e-09 | 56 |
future spinal cord | 7.86e-09 | 56 |
neural keel | 7.86e-09 | 56 |
neocortex | 9.87e-07 | 20 |