FFCP PHASE1:Hg19::chr1:215202322..215202325,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:215202322..215202325,+ | |||
|coexpression_cluster_id=C633 | |coexpression_cluster_id=C633 | ||
|description=CAGE_peak_at_chr1:215202322..215202325,+ | |description=CAGE_peak_at_chr1:215202322..215202325,+ | ||
|id=chr1:215202322..215202325,+ | |id=chr1:215202322..215202325,+ | ||
|ontology_enrichment_celltype=CL:0000057!2.97e-16!75;CL:1000306!1.14e-11!4;CL:0002547!1.14e-11!4;CL:0002334!2.19e-10!12;CL:0000055!6.80e-10!180;CL:0002580!3.16e-09!3;CL:0000197!1.47e-08!6;CL:0000098!1.47e-08!6;CL:0002167!1.47e-08!6;CL:0002573!1.79e-08!2;CL:0002556!1.94e-07!6 | |ontology_enrichment_celltype=CL:0000057!2.97e-16!75;CL:1000306!1.14e-11!4;CL:0002547!1.14e-11!4;CL:0002334!2.19e-10!12;CL:0000055!6.80e-10!180;CL:0002580!3.16e-09!3;CL:0000197!1.47e-08!6;CL:0000098!1.47e-08!6;CL:0002167!1.47e-08!6;CL:0002573!1.79e-08!2;CL:0002556!1.94e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000197;6.93e-59;6!CL:0000098;6.93e-59;6!CL:0002167;6.93e-59;6!CL:0000228;3.67e-23;1!CL:0002372;3.67e-23;1!CL:0000710;4.35e-18;20!CL:0000075;1.61e-13;27!CL:0002077;9.44e-10;34!CL:0002573;1.26e-08;2!CL:0000056;8.85e-07;4!CL:0000737;8.85e-07;4!CL:1000306;8.85e-07;4!CL:0002547;8.85e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000197,8.67e-59,6;CL:0000098,8.67e-59,6;CL:0002167,8.67e-59,6;CL:0000228,4.10e-23,1;CL:0002372,4.10e-23,1;CL:0000710,4.65e-18,20;CL:0000075,1.69e-13,27;CL:0002077,8.38e-11,34;CL:0000133,3.14e-09,59;CL:0002573,1.12e-08,2;CL:0000221,1.26e-07,72;CL:1000306,7.70e-07,4;CL:0002547,7.70e-07,4;CL:0000737,9.11e-07,4;CL:0000515,9.11e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000515;8.85e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3193;2.74e-12;2!DOID:962;2.74e-12;2!DOID:1192;1.26e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,2.32e-12,2;DOID:962,2.32e-12,2;DOID:1192,1.12e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000415!1.14e-11!4;UBERON:0007240!1.14e-11!4;UBERON:0005742!1.14e-11!4;UBERON:0005734!1.14e-11!4;UBERON:0004664!1.14e-11!4;UBERON:0004663!1.14e-11!4;UBERON:0001758!1.94e-07!6;UBERON:0003672!1.94e-07!6 | |ontology_enrichment_uberon=UBERON:0000415!1.14e-11!4;UBERON:0007240!1.14e-11!4;UBERON:0005742!1.14e-11!4;UBERON:0005734!1.14e-11!4;UBERON:0004664!1.14e-11!4;UBERON:0004663!1.14e-11!4;UBERON:0001758!1.94e-07!6;UBERON:0003672!1.94e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002119;7.07e-07;4!UBERON:0004797;8.85e-07;4!UBERON:0000415;8.85e-07;4!UBERON:0007240;8.85e-07;4!UBERON:0005742;8.85e-07;4!UBERON:0005734;8.85e-07;4!UBERON:0004664;8.85e-07;4!UBERON:0004663;8.85e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002119,6.87e-07,4;UBERON:0000415,7.70e-07,4;UBERON:0007240,7.70e-07,4;UBERON:0005742,7.70e-07,4;UBERON:0005734,7.70e-07,4;UBERON:0004664,7.70e-07,4;UBERON:0004663,7.70e-07,4 | |||
|phase1_expression=0.54503513781167,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,1.85372853138506,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,0,0.494533858557114,0,0,0,0.125118519871964,0,0.438977620880838,0.919463387397059,0.150238058906597,0,0.179389635688862,0.213557388818567,0.423863802319124,0,0,0,0,0.675105328965065,0,0,0.736399189138395,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45579603071565,6.24501460790066,2.52323864054295,1.17141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0.280660094433074,0.128139149255701,0,0.482561763430822,0,0.462629081407967,0.177561725313127,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0.701139929541673,0,0,0.251567901752575,0,0,0,0,0,0,0,0,2.90294345488599,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0.432626562123789,0,0,0.126698501011437,0,0,0.18378979906969,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.54503513781167,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,1.85372853138506,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,0,0.494533858557114,0,0,0,0.125118519871964,0,0.438977620880838,0.919463387397059,0.150238058906597,0,0.179389635688862,0.213557388818567,0.423863802319124,0,0,0,0,0.675105328965065,0,0,0.736399189138395,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45579603071565,6.24501460790066,2.52323864054295,1.17141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,0.280660094433074,0.128139149255701,0,0.482561763430822,0,0.462629081407967,0.177561725313127,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0.701139929541673,0,0,0.251567901752575,0,0,0,0,0,0,0,0,2.90294345488599,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0.432626562123789,0,0,0.126698501011437,0,0,0.18378979906969,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:215202322..215202325,+ | |short_description=p@chr1:215202322..215202325,+ | ||
}} | }} |
Latest revision as of 03:48, 28 July 2015
Short description: | p@chr1:215202322..215202325, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:215202322..215202325, + |
Coexpression cluster: | C633_Olfactory_Fibroblast_Preadipocyte_Hair_tenocyte_mesenchymal_basal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
receptor cell | 8.67e-59 | 6 |
sensory epithelial cell | 8.67e-59 | 6 |
olfactory epithelial cell | 8.67e-59 | 6 |
multinucleate cell | 4.10e-23 | 1 |
myotube | 4.10e-23 | 1 |
neurecto-epithelial cell | 4.65e-18 | 20 |
columnar/cuboidal epithelial cell | 1.69e-13 | 27 |
ecto-epithelial cell | 8.38e-11 | 34 |
neurectodermal cell | 3.14e-09 | 59 |
Schwann cell | 1.12e-08 | 2 |
ectodermal cell | 1.26e-07 | 72 |
fibroblast of tunica adventitia of artery | 7.70e-07 | 4 |
fibroblast of the aortic adventitia | 7.70e-07 | 4 |
striated muscle cell | 9.11e-07 | 4 |
skeletal muscle myoblast | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
left ovary | 6.87e-07 | 4 |
artery wall | 7.70e-07 | 4 |
tunica adventitia of artery | 7.70e-07 | 4 |
adventitia | 7.70e-07 | 4 |
tunica adventitia of blood vessel | 7.70e-07 | 4 |
aorta tunica adventitia | 7.70e-07 | 4 |
aorta wall | 7.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 2.32e-12 | 2 |
neurofibroma | 2.32e-12 | 2 |
peripheral nervous system neoplasm | 1.12e-08 | 3 |