FFCP PHASE1:Hg19::chr1:20987540..20987548,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:20987540..20987548,+ | |||
|coexpression_cluster_id=C1216 | |||
|description=CAGE_peak_at_chr1:20987540..20987548,+ | |description=CAGE_peak_at_chr1:20987540..20987548,+ | ||
|id=chr1:20987540..20987548,+ | |id=chr1:20987540..20987548,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.24e-42!140;CL:0000037!5.29e-37!172;CL:0000566!5.29e-37!172;CL:0000988!1.61e-34!182;CL:0002032!4.60e-27!165;CL:0000837!4.60e-27!165;CL:0002031!2.38e-23!124;CL:0002087!1.69e-20!119;CL:0000451!5.10e-19!10;CL:0002393!9.50e-18!9;CL:0002397!9.50e-18!9;CL:0000134!2.28e-15!358;CL:0000763!3.43e-15!112;CL:0000049!3.43e-15!112;CL:0002320!6.62e-15!365;CL:0000453!8.05e-15!5;CL:0000623!9.72e-15!3;CL:0000825!9.72e-15!3;CL:0000767!2.30e-14!3;CL:0000766!2.60e-14!76;CL:0000784!1.09e-13!3;CL:0000219!2.83e-13!390;CL:0000842!3.36e-13!3;CL:0000990!2.50e-12!8;CL:0000557!4.98e-12!71;CL:0000838!6.73e-12!52;CL:0000542!1.27e-11!53;CL:0000051!1.27e-11!53;CL:0000034!1.39e-11!444;CL:0000048!2.55e-11!430;CL:0000791!3.10e-11!18;CL:0000789!3.10e-11!18;CL:0002420!3.10e-11!18;CL:0002419!3.10e-11!18;CL:0000790!3.10e-11!18;CL:0000723!4.83e-11!436;CL:0001014!1.27e-10!2;CL:0001016!1.27e-10!2;CL:0000224!5.02e-10!4;CL:0000094!2.57e-09!8;CL:0000839!5.46e-09!70;CL:0002274!1.36e-08!5;CL:0000457!1.36e-08!5;CL:0002191!1.36e-08!5;CL:0000097!1.36e-08!5;CL:0000831!1.36e-08!5;CL:0002028!1.36e-08!5;CL:0002057!1.61e-08!42;CL:0002009!1.62e-08!65;CL:0000860!7.84e-08!45;CL:0000084!8.05e-08!25;CL:0000827!8.05e-08!25;CL:0000840!1.80e-07!5;CL:0001029!1.80e-07!5;CL:0000624!4.00e-07!6;CL:0000080!7.84e-07!6;CL:0000081!8.81e-07!11 | |ontology_enrichment_celltype=CL:0000738!2.24e-42!140;CL:0000037!5.29e-37!172;CL:0000566!5.29e-37!172;CL:0000988!1.61e-34!182;CL:0002032!4.60e-27!165;CL:0000837!4.60e-27!165;CL:0002031!2.38e-23!124;CL:0002087!1.69e-20!119;CL:0000451!5.10e-19!10;CL:0002393!9.50e-18!9;CL:0002397!9.50e-18!9;CL:0000134!2.28e-15!358;CL:0000763!3.43e-15!112;CL:0000049!3.43e-15!112;CL:0002320!6.62e-15!365;CL:0000453!8.05e-15!5;CL:0000623!9.72e-15!3;CL:0000825!9.72e-15!3;CL:0000767!2.30e-14!3;CL:0000766!2.60e-14!76;CL:0000784!1.09e-13!3;CL:0000219!2.83e-13!390;CL:0000842!3.36e-13!3;CL:0000990!2.50e-12!8;CL:0000557!4.98e-12!71;CL:0000838!6.73e-12!52;CL:0000542!1.27e-11!53;CL:0000051!1.27e-11!53;CL:0000034!1.39e-11!444;CL:0000048!2.55e-11!430;CL:0000791!3.10e-11!18;CL:0000789!3.10e-11!18;CL:0002420!3.10e-11!18;CL:0002419!3.10e-11!18;CL:0000790!3.10e-11!18;CL:0000723!4.83e-11!436;CL:0001014!1.27e-10!2;CL:0001016!1.27e-10!2;CL:0000224!5.02e-10!4;CL:0000094!2.57e-09!8;CL:0000839!5.46e-09!70;CL:0002274!1.36e-08!5;CL:0000457!1.36e-08!5;CL:0002191!1.36e-08!5;CL:0000097!1.36e-08!5;CL:0000831!1.36e-08!5;CL:0002028!1.36e-08!5;CL:0002057!1.61e-08!42;CL:0002009!1.62e-08!65;CL:0000860!7.84e-08!45;CL:0000084!8.05e-08!25;CL:0000827!8.05e-08!25;CL:0000840!1.80e-07!5;CL:0001029!1.80e-07!5;CL:0000624!4.00e-07!6;CL:0000080!7.84e-07!6;CL:0000081!8.81e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000623;6.57e-29;3!CL:0000767;1.41e-28;3!CL:0002393;3.55e-26;6!CL:0002397;3.55e-26;6!CL:0001014;1.45e-20;2!CL:0001016;1.45e-20;2!CL:0000094;6.29e-19;8!CL:0000081;7.68e-14;11!CL:0000453;8.83e-09;5!CL:0000542;9.72e-09;53!CL:0000840;1.87e-07;5!CL:0000236;4.19e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,2.91e-29,3;CL:0000825,2.91e-29,3;CL:0000767,1.79e-28,3;CL:0000738,6.32e-25,136;CL:0002032,1.20e-20,161;CL:0000837,1.20e-20,161;CL:0001014,1.39e-20,2;CL:0001016,1.39e-20,2;CL:0000037,1.12e-19,168;CL:0000094,7.60e-19,8;CL:0000988,1.54e-18,177;CL:0002031,1.07e-17,120;CL:0002393,1.85e-17,9;CL:0002397,1.85e-17,9;CL:0000081,8.80e-14,11;CL:0000838,1.47e-13,52;CL:0000542,2.79e-13,53;CL:0000051,2.79e-13,53;CL:0002087,8.12e-12,115;CL:0000766,2.78e-09,72;CL:0000763,7.02e-09,108;CL:0000049,7.02e-09,108;CL:0000453,8.67e-09,5;CL:0000134,8.43e-08,354;CL:0002320,1.37e-07,361;CL:0000840,1.84e-07,5;CL:0001029,1.84e-07,5;CL:0000219,7.66e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000051;9.72e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.83e-14!375;UBERON:0002390!2.81e-12!102;UBERON:0003061!2.81e-12!102;UBERON:0002371!8.48e-12!80;UBERON:0002193!8.61e-11!112;UBERON:0001474!1.01e-10!86;UBERON:0004765!1.34e-08!101;UBERON:0001434!1.34e-08!101;UBERON:0002405!3.98e-07!115 | |ontology_enrichment_uberon=UBERON:0002384!2.83e-14!375;UBERON:0002390!2.81e-12!102;UBERON:0003061!2.81e-12!102;UBERON:0002371!8.48e-12!80;UBERON:0002193!8.61e-11!112;UBERON:0001474!1.01e-10!86;UBERON:0004765!1.34e-08!101;UBERON:0001434!1.34e-08!101;UBERON:0002405!3.98e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.67e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.15148819429164,1.08371286321253,0,0,0,0,0,0.587200878669695,3.32397245119126,7.01905566145496,5.20826089718044,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,1.06302149982522,0.419317291016752,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,2.27685187643779,1.17447437874188,1.91136614062614,0,2.24203425192614,0,0.590129310341499,1.57204305099666,0,0.167186495390678,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,1.61285394579786,3.20928234940209,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,1.72943944100354,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77327684181734,1.94064817373566,2.69520376187472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4747128070665,6.96421759102155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.15148819429164,1.08371286321253,0,0,0,0,0,0.587200878669695,3.32397245119126,7.01905566145496,5.20826089718044,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,1.06302149982522,0.419317291016752,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,2.27685187643779,1.17447437874188,1.91136614062614,0,2.24203425192614,0,0.590129310341499,1.57204305099666,0,0.167186495390678,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,1.61285394579786,3.20928234940209,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,1.72943944100354,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77327684181734,1.94064817373566,2.69520376187472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4747128070665,6.96421759102155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:20987540..20987548,+ | |short_description=p@chr1:20987540..20987548,+ | ||
}} | }} |
Latest revision as of 03:25, 28 July 2015
Short description: | p@chr1:20987540..20987548, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:20987540..20987548, + |
Coexpression cluster: | C1216_immature_CD14_Natural_Peripheral_Mast_CD34_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 2.91e-29 | 3 |
pro-NK cell | 2.91e-29 | 3 |
basophil | 1.79e-28 | 3 |
leukocyte | 6.32e-25 | 136 |
hematopoietic oligopotent progenitor cell | 1.20e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.20e-20 | 161 |
CD1a-positive Langerhans cell | 1.39e-20 | 2 |
immature CD1a-positive Langerhans cell | 1.39e-20 | 2 |
hematopoietic stem cell | 1.12e-19 | 168 |
granulocyte | 7.60e-19 | 8 |
hematopoietic cell | 1.54e-18 | 177 |
hematopoietic lineage restricted progenitor cell | 1.07e-17 | 120 |
intermediate monocyte | 1.85e-17 | 9 |
CD14-positive, CD16-positive monocyte | 1.85e-17 | 9 |
blood cell | 8.80e-14 | 11 |
lymphoid lineage restricted progenitor cell | 1.47e-13 | 52 |
lymphocyte | 2.79e-13 | 53 |
common lymphoid progenitor | 2.79e-13 | 53 |
nongranular leukocyte | 8.12e-12 | 115 |
myeloid leukocyte | 2.78e-09 | 72 |
myeloid cell | 7.02e-09 | 108 |
common myeloid progenitor | 7.02e-09 | 108 |
Langerhans cell | 8.67e-09 | 5 |
mesenchymal cell | 8.43e-08 | 354 |
connective tissue cell | 1.37e-07 | 361 |
immature conventional dendritic cell | 1.84e-07 | 5 |
common dendritic progenitor | 1.84e-07 | 5 |
motile cell | 7.66e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.67e-07 | 371 |