FFCP PHASE1:Hg19::chr1:209801414..209801425,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:209801414..209801425,- | |||
|coexpression_cluster_id=C571 | |coexpression_cluster_id=C571 | ||
|description=CAGE_peak_at_chr1:209801414..209801425,- | |description=CAGE_peak_at_chr1:209801414..209801425,- | ||
|id=chr1:209801414..209801425,- | |id=chr1:209801414..209801425,- | ||
|ontology_enrichment_celltype=CL:0002076!9.29e-28!43;CL:0000066!8.95e-23!254;CL:0000223!3.41e-18!59;CL:0002251!2.00e-16!21;CL:0002368!4.18e-13!13;CL:0002159!3.26e-11!13;CL:0000063!8.29e-11!578;CL:0000244!1.37e-10!4;CL:0000731!1.37e-10!4;CL:0000349!5.33e-08!3;CL:0002577!5.33e-08!3;CL:0002231!8.64e-08!3;CL:0002621!9.47e-08!3;CL:0002541!2.95e-07!3;CL:0000240!5.56e-07!6;CL:0000311!5.56e-07!6;CL:0000079!5.56e-07!6;CL:0000237!5.56e-07!6;CL:0000036!5.56e-07!6;CL:0000357!5.56e-07!6;CL:0000114!5.56e-07!6 | |ontology_enrichment_celltype=CL:0002076!9.29e-28!43;CL:0000066!8.95e-23!254;CL:0000223!3.41e-18!59;CL:0002251!2.00e-16!21;CL:0002368!4.18e-13!13;CL:0002159!3.26e-11!13;CL:0000063!8.29e-11!578;CL:0000244!1.37e-10!4;CL:0000731!1.37e-10!4;CL:0000349!5.33e-08!3;CL:0002577!5.33e-08!3;CL:0002231!8.64e-08!3;CL:0002621!9.47e-08!3;CL:0002541!2.95e-07!3;CL:0000240!5.56e-07!6;CL:0000311!5.56e-07!6;CL:0000079!5.56e-07!6;CL:0000237!5.56e-07!6;CL:0000036!5.56e-07!6;CL:0000357!5.56e-07!6;CL:0000114!5.56e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000244;5.15e-33;4!CL:0000731;5.15e-33;4!CL:0002159;4.97e-21;14!CL:0002368;4.92e-16;13!CL:0000312;6.52e-16;5!CL:0000362;3.19e-15;9!CL:0000240;2.35e-13;6!CL:0000311;2.35e-13;6!CL:0000079;2.35e-13;6!CL:0000237;2.35e-13;6!CL:0002231;1.91e-12;3!CL:0002328;2.69e-12;3!CL:0002577;2.69e-12;3!CL:0002076;7.39e-11;42!CL:0002077;1.03e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.75e-33,4;CL:0000731,1.75e-33,4;CL:0002159,3.50e-21,14;CL:0002368,6.16e-16,13;CL:0000312,7.05e-16,5;CL:0000362,3.70e-15,9;CL:0000240,2.51e-13,6;CL:0000311,2.51e-13,6;CL:0000079,2.51e-13,6;CL:0000237,2.51e-13,6;CL:0000036,2.51e-13,6;CL:0000357,2.51e-13,6;CL:0000114,2.51e-13,6;CL:0000066,1.60e-12,253;CL:0002231,1.71e-12,3;CL:0002577,3.19e-12,3;CL:0002328,3.57e-12,3;CL:0002076,1.04e-11,42;CL:0002077,1.87e-08,34;CL:0000223,3.44e-08,58 | |||
|ontology_enrichment_development_v019=CL:0000357;2.35e-13;6!CL:0000114;2.35e-13;6 | |||
|ontology_enrichment_disease=DOID:1749!3.43e-10!14 | |ontology_enrichment_disease=DOID:1749!3.43e-10!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.24e-14!14;UBERON:0000158!3.24e-14!14;UBERON:0003124!1.62e-11!7;UBERON:0004119!2.29e-11!169;UBERON:0000925!2.29e-11!169;UBERON:0006595!2.29e-11!169;UBERON:0001004!7.90e-09!72;UBERON:0000365!1.94e-08!5;UBERON:0001949!9.47e-08!3;UBERON:0005157!1.56e-07!51;UBERON:0005153!1.88e-07!37;UBERON:0000478!2.21e-07!24;UBERON:0000476!2.95e-07!3;UBERON:0000920!2.95e-07!3;UBERON:0005910!5.32e-07!6 | |ontology_enrichment_uberon=UBERON:0005631!3.24e-14!14;UBERON:0000158!3.24e-14!14;UBERON:0003124!1.62e-11!7;UBERON:0004119!2.29e-11!169;UBERON:0000925!2.29e-11!169;UBERON:0006595!2.29e-11!169;UBERON:0001004!7.90e-09!72;UBERON:0000365!1.94e-08!5;UBERON:0001949!9.47e-08!3;UBERON:0005157!1.56e-07!51;UBERON:0005153!1.88e-07!37;UBERON:0000478!2.21e-07!24;UBERON:0000476!2.95e-07!3;UBERON:0000920!2.95e-07!3;UBERON:0005910!5.32e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.74e-26;5!UBERON:0005910;3.98e-22;6!UBERON:0000486;5.32e-17;12!UBERON:0004815;2.69e-12;3!UBERON:0002031;2.69e-12;3!UBERON:0001987;1.91e-09;4!UBERON:0001003;3.32e-09;15!UBERON:0007376;3.32e-09;15!UBERON:0005911;2.04e-08;36!UBERON:0002185;1.01e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,7.35e-27,5;UBERON:0005910,1.95e-22,6;UBERON:0006554,3.82e-13,47;UBERON:0001008,7.64e-13,48;UBERON:0004815,3.57e-12,3;UBERON:0002031,3.57e-12,3;UBERON:0003124,3.07e-11,7;UBERON:0001987,2.17e-09,4;UBERON:0004340,2.17e-09,4;UBERON:0001003,3.63e-09,15;UBERON:0007376,3.63e-09,15;UBERON:0007383,3.63e-09,15;UBERON:0004119,1.06e-07,160;UBERON:0000925,1.06e-07,160;UBERON:0006595,1.06e-07,160;UBERON:0002185,1.19e-07,5;UBERON:0005911,5.98e-07,82 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,4.43704812200145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,1.35426486594342,0.188242339542605,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,1.42675371031213,3.37205259772859,2.01057944823262,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84780341018745,0.850650583454319,0.806026704325635,2.03443756959773,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,4.99306318531491,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,2.40607764363942,2.20994373446151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,2.31398881505369,1.72971060628596,0.127612712494584,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0,1.72202149068492,1.68471475667626,1.7737206141467,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0,0,0,0,0.164230914106418,0,0,0,0.274083849293502,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0.544017803369474,0.2506898940227,0,0.655745261419609,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0.680117776536817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,4.43704812200145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,1.35426486594342,0.188242339542605,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,1.42675371031213,3.37205259772859,2.01057944823262,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84780341018745,0.850650583454319,0.806026704325635,2.03443756959773,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,4.99306318531491,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,2.40607764363942,2.20994373446151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,2.31398881505369,1.72971060628596,0.127612712494584,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0,1.72202149068492,1.68471475667626,1.7737206141467,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0,0,0,0,0.164230914106418,0,0,0,0.274083849293502,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0.544017803369474,0.2506898940227,0,0.655745261419609,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0.680117776536817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:209801414..209801425,- | |short_description=p@chr1:209801414..209801425,- | ||
}} | }} |
Latest revision as of 03:20, 28 July 2015
Short description: | p@chr1:209801414..209801425, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209801414..209801425, - |
Coexpression cluster: | C571_Bronchial_Prostate_Small_Tracheal_Mallassezderived_Urothelial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.75e-33 | 4 |
urothelial cell | 1.75e-33 | 4 |
general ecto-epithelial cell | 3.50e-21 | 14 |
respiratory epithelial cell | 6.16e-16 | 13 |
keratinocyte | 7.05e-16 | 5 |
epidermal cell | 3.70e-15 | 9 |
stratified squamous epithelial cell | 2.51e-13 | 6 |
keratin accumulating cell | 2.51e-13 | 6 |
stratified epithelial cell | 2.51e-13 | 6 |
keratinizing barrier epithelial cell | 2.51e-13 | 6 |
epithelial fate stem cell | 2.51e-13 | 6 |
stratified epithelial stem cell | 2.51e-13 | 6 |
surface ectodermal cell | 2.51e-13 | 6 |
epithelial cell | 1.60e-12 | 253 |
epithelial cell of prostate | 1.71e-12 | 3 |
placental epithelial cell | 3.19e-12 | 3 |
bronchial epithelial cell | 3.57e-12 | 3 |
endo-epithelial cell | 1.04e-11 | 42 |
ecto-epithelial cell | 1.87e-08 | 34 |
endodermal cell | 3.44e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
urothelium | 7.35e-27 | 5 |
transitional epithelium | 1.95e-22 | 6 |
urinary system structure | 3.82e-13 | 47 |
renal system | 7.64e-13 | 48 |
lower respiratory tract epithelium | 3.57e-12 | 3 |
epithelium of bronchus | 3.57e-12 | 3 |
chorion | 3.07e-11 | 7 |
placenta | 2.17e-09 | 4 |
allantois | 2.17e-09 | 4 |
skin epidermis | 3.63e-09 | 15 |
outer epithelium | 3.63e-09 | 15 |
enveloping layer of ectoderm | 3.63e-09 | 15 |
endoderm-derived structure | 1.06e-07 | 160 |
endoderm | 1.06e-07 | 160 |
presumptive endoderm | 1.06e-07 | 160 |
bronchus | 1.19e-07 | 5 |
endo-epithelium | 5.98e-07 | 82 |