FFCP PHASE1:Hg19::chr1:19403393..19403410,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:19403393..19403410,- | |||
|coexpression_cluster_id=C3916 | |||
|description=CAGE_peak_at_chr1:19403393..19403410,- | |description=CAGE_peak_at_chr1:19403393..19403410,- | ||
|id=chr1:19403393..19403410,- | |id=chr1:19403393..19403410,- | ||
|ontology_enrichment_celltype=CL:0002327!1.46e-07!4 | |ontology_enrichment_celltype=CL:0002327!1.46e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000312;2.22e-27;5!CL:0000240;5.13e-23;6!CL:0000311;5.13e-23;6!CL:0000079;5.13e-23;6!CL:0000237;5.13e-23;6!CL:0002159;6.21e-22;14!CL:0000575;9.86e-18;2!CL:0000362;1.01e-15;9!CL:0002202;1.09e-15;9!CL:0002632;1.09e-15;9!CL:0000307;2.07e-12;3!CL:0002328;2.74e-12;3!CL:0002615;2.74e-12;3!CL:0002368;3.47e-11;13!CL:0002077;1.31e-09;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000312,2.08e-27,5;CL:0000240,4.86e-23,6;CL:0000311,4.86e-23,6;CL:0000079,4.86e-23,6;CL:0000237,4.86e-23,6;CL:0000036,4.86e-23,6;CL:0000357,4.86e-23,6;CL:0000114,4.86e-23,6;CL:0002159,6.21e-22,14;CL:0000575,1.07e-17,2;CL:0002202,9.73e-16,9;CL:0000362,9.73e-16,9;CL:0002632,9.73e-16,9;CL:0000068,2.07e-12,3;CL:0000069,2.07e-12,3;CL:0000307,2.07e-12,3;CL:0000377,2.07e-12,3;CL:0002328,2.31e-12,3;CL:0002615,3.24e-12,3;CL:0002368,3.21e-11,13;CL:0002077,1.67e-09,34 | |||
|ontology_enrichment_development_v019=CL:0000357;5.13e-23;6!CL:0000114;5.13e-23;6!CL:0000377;2.07e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001911!1.46e-07!4;UBERON:0005333!1.46e-07!4;UBERON:0008425!1.46e-07!4;UBERON:0005311!1.46e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.74e-12;3!UBERON:0002031;2.74e-12;3!UBERON:0001003;7.58e-10;15!UBERON:0007376;7.58e-10;15!UBERON:0007196;7.92e-10;15!UBERON:0001558;7.92e-10;15!UBERON:0000964;1.50e-09;4!UBERON:0010409;1.50e-09;4!UBERON:0002185;6.78e-08;5!UBERON:0003102;5.92e-07;50!UBERON:0003688;8.72e-07;6!UBERON:0002358;8.72e-07;6!UBERON:0003684;8.72e-07;6!UBERON:0001178;8.72e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.31e-12,3;UBERON:0002031,2.31e-12,3;UBERON:0001003,7.41e-10,15;UBERON:0007376,7.41e-10,15;UBERON:0007196,7.41e-10,15;UBERON:0001558,7.41e-10,15;UBERON:0007383,7.41e-10,15;UBERON:0000964,1.57e-09,4;UBERON:0010409,1.57e-09,4;UBERON:0004348,1.57e-09,4;UBERON:0005427,1.57e-09,4;UBERON:0002185,6.13e-08,5;UBERON:0003688,9.49e-07,6;UBERON:0002358,9.49e-07,6;UBERON:0003684,9.49e-07,6;UBERON:0001178,9.49e-07,6 | |||
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|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0.383829398097213,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0.386521706326594,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1240175325762,11.3597738825143,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17781969722645,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0.690860683462397,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0.47775168788705,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:19403393..19403410,- | |short_description=p@chr1:19403393..19403410,- | ||
}} | }} |
Latest revision as of 01:45, 28 July 2015
Short description: | p@chr1:19403393..19403410, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:19403393..19403410, - |
Coexpression cluster: | C3916_Keratinocyte_Bronchial_Tracheal_Corneal_Adipocyte_glioblastoma_Whole |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratinocyte | 2.08e-27 | 5 |
stratified squamous epithelial cell | 4.86e-23 | 6 |
keratin accumulating cell | 4.86e-23 | 6 |
stratified epithelial cell | 4.86e-23 | 6 |
keratinizing barrier epithelial cell | 4.86e-23 | 6 |
epithelial fate stem cell | 4.86e-23 | 6 |
stratified epithelial stem cell | 4.86e-23 | 6 |
surface ectodermal cell | 4.86e-23 | 6 |
general ecto-epithelial cell | 6.21e-22 | 14 |
corneal epithelial cell | 1.07e-17 | 2 |
epithelial cell of tracheobronchial tree | 9.73e-16 | 9 |
epidermal cell | 9.73e-16 | 9 |
epithelial cell of lower respiratory tract | 9.73e-16 | 9 |
duct epithelial cell | 2.07e-12 | 3 |
branched duct epithelial cell | 2.07e-12 | 3 |
tracheal epithelial cell | 2.07e-12 | 3 |
tracheoblast | 2.07e-12 | 3 |
bronchial epithelial cell | 2.31e-12 | 3 |
adipocyte of omentum tissue | 3.24e-12 | 3 |
respiratory epithelial cell | 3.21e-11 | 13 |
ecto-epithelial cell | 1.67e-09 | 34 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.31e-12 | 3 |
epithelium of bronchus | 2.31e-12 | 3 |
skin epidermis | 7.41e-10 | 15 |
outer epithelium | 7.41e-10 | 15 |
tracheobronchial tree | 7.41e-10 | 15 |
lower respiratory tract | 7.41e-10 | 15 |
enveloping layer of ectoderm | 7.41e-10 | 15 |
cornea | 1.57e-09 | 4 |
eye surface | 1.57e-09 | 4 |
optic eminence | 1.57e-09 | 4 |
corneal primordium | 1.57e-09 | 4 |
bronchus | 6.13e-08 | 5 |
omentum | 9.49e-07 | 6 |
peritoneum | 9.49e-07 | 6 |
abdominal cavity | 9.49e-07 | 6 |
visceral peritoneum | 9.49e-07 | 6 |